Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00585 ATGCAAGTGGCGGCAGAACCTCAACAGACTCGTCACCAACAAGACACTCCGATGTGCCGCCAAATCCAGCTCACTATCACCGATCACACCCTCCCCAACATCACTGCCGCCGCCGCTGAAGGTGCCTCAGACAAACTCGACGGGGAGGATCTCTTCATTCCGCCCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTTGGCATCCGCTCCGTCATATATTTGTGTCCTGAGCCGTATCCGGAGGCCAACGTGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCATTTTGGGATCGAGGGTCATAAGGAACCTTTTGTGAACATCCCAGAGGACACGATCCGTGAAGCACTAAAAGTTGTACTTGATGTCAGGAATCACCCAGTTATAATTCACTGTAAACGGGGAAAGCACCGAACGGGTTGTTTAGTAGGATGCTATAGAAAAATGCAAAAGTGGTGTTTGTCATCTGTATTTGATGAGTACCAGCGCTTTGCAGCTGCCAAAGCAAGAGTTTCAGATCAGAGACGTAACAGACCAAGTTATGCTATGCTGAGTAATCTGTTTATAGTTTGGACTAAACGAATGAAAAGCTGCAATGTGGATTATGAGCTCATCTCGAGCTCACGTTGTGACATGTCTATGGCTGAACTCCAGTTGCATGCACTTTGCCGCCTATGTGAAGAAAAGTTTTGCGCCAATTAG 753 0.4834 MQVAAEPQQTRHQQDTPMCRQIQLTITDHTLPNITAAAAEGASDKLDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGIRSVIYLCPEPYPEANVEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKMQKWCLSSVFDEYQRFAAAKARVSDQRRNRPSYAMLSNLFIVWTKRMKSCNVDYELISSSRCDMSMAELQLHALCRLCEEKFCAN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00585 250 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Spst8g00585 250 FunFam probable tyrosine-protein phosphatase At1g05000 51 197 - -
Spst8g00585 250 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 192 IPR029021 -
Spst8g00585 250 PRINTS Plant and fungal dual specificity phosphatase signature 89 102 IPR020428 GO:0016791
Spst8g00585 250 PRINTS Plant and fungal dual specificity phosphatase signature 108 122 IPR020428 GO:0016791
Spst8g00585 250 PRINTS Plant and fungal dual specificity phosphatase signature 52 69 IPR020428 GO:0016791
Spst8g00585 250 PRINTS Plant and fungal dual specificity phosphatase signature 125 139 IPR020428 GO:0016791
Spst8g00585 250 ProSiteProfiles Dual specificity protein phosphatase domain profile. 57 213 IPR020422 GO:0006470|GO:0008138
Spst8g00585 250 CDD PFA-DSP_Siw14 51 192 - -
Spst8g00585 250 PANTHER TYROSINE-PROTEIN PHOSPHATASE 40 192 - -
Spst8g00585 250 Pfam Tyrosine phosphatase family 53 191 IPR004861 -
Spst8g00585 250 Gene3D Protein tyrosine phosphatase superfamily 51 195 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00585 Spst-Chr8 5549643 5554393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00585 29 192 Protein tyrosine phosphatase (PTP) family AT4G03960 70.122 9.98e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00585 K18045 - gmx:100814279 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00585 8 5549643 5554393 Spst8g00585 8 5549643 5554393 ECH