Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00583 ATGGAAGAGCTCTCCGCGGGGCCTCTCGTCCCCGCCGTCGACAAACCCAACGCTTCCAGAGCAGCCGCCGCCGCTGCTGCTGCCGACACAGGCGCCTCTGCCGCCGCATCCGGCGACACGTTCCCGGCCTCCACGTCGGAGCCGGACAAGGACTTTCTCTGTCCGATTTGCATGCAGATCATCAAGGATGCGTTCCTCACCGCATGCGGCCACAGCTTCTGCTACATGTGCATCATCACTCACCTCCGCAACAAGAACGATTGCCCTTGCTGCGGTCACTACCTCACCAACACCAACTTGTTCCCTAACTTTTTGCTCGACAAGCTACTTAAGAAGACTTCTGCGCGTCAAATATCAAAAACTGCTTCACCTGTGGAACATTTCCGGCAGGCATTGCAAAAGGTTAGTTGTGCTTTCATTCTTTCTCTTGATTATAATCTGTCAAACATGTAA 453 0.5408 MEELSAGPLVPAVDKPNASRAAAAAAAADTGASAAASGDTFPASTSEPDKDFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKNDCPCCGHYLTNTNLFPNFLLDKLLKKTSARQISKTASPVEHFRQALQKVSCAFILSLDYNLSNM 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00583 150 SMART ring_2 54 91 IPR001841 -
Spst8g00583 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE COP1 16 134 IPR042755 GO:0061630
Spst8g00583 150 ProSitePatterns Zinc finger RING-type signature. 69 78 IPR017907 -
Spst8g00583 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 139 IPR013083 -
Spst8g00583 150 CDD RING-HC_COP1 50 96 - -
Spst8g00583 150 SUPERFAMILY RING/U-box 47 111 - -
Spst8g00583 150 ProSiteProfiles Zinc finger RING-type profile. 54 91 IPR001841 -
Spst8g00583 150 Pfam Zinc finger, C3HC4 type (RING finger) 54 91 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00583 50 101 RAD5 or RAD16-like Gene Family AT5G05130 41.509 3.56e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00583 K10143 - gmx:100788171 234.958