Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00579 ATGCGATGCAATGATGCACCGGGATTGCTTTTTGAGTGCAACAAATTGTTGGTTACTGATGCTGTGGTGGGTTTTGTTCAAAATTTCAGAATTGTAATGGAAAACTCAGACCATGACGAACCCGAGAAGAAGAGGCCTCATCTCACCTCTGTTTCCTCCCGCACGCCTCGAAACTCCATCAACTCTCCTACCACCAACAAAATCGCTGATGCAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAAAAACATGCTTTGCATGATCTTGAAGAAAAAATTGGAGAATTGAAAGGAAAGCAAAGTTCTTATGATGACTTGTTAATTGCATTGAACCAACACTGGATTCAGTTGGTAGACGATATGATTCTTCTTGCAATACAAGCTGGGAGAGGCAAAGGCAAAGACACATTGCAATATTTGACTGACATTGATACTCCTAAAGGTTCACTTCCTTCGTGTCCCGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCTATTAAAGGAATCAGTGATGATGAGATAACTAGTTCTGTTGAGGAGGCCCTTGCTTTGCGTCAATCATCTACAAGTGAGTTGTTCAAACTCCTGAAGGATATTATTGATGATCAGATGGAAAGATCAGGCAGTATAGCTCAGGTTTTACATGGAGATTTATCATCAGAAGATGCTATAAGCCTAATGACTAAGATTGATGATATGATGAAAGAAGAGGCAAATAATTTACAAGAAGTGATTGATACTCTCCATGCAAAGCATAAAGAGTATACTGTTGGTATTCAAAGTTCTGTTAATGAGTGCATACAAGATCAATCTGACATTAAACACCTTGCAGGTGAGCTTGATGAGGTAATCGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGATGCGGCAATAGGGATGAATTCTCCCAATGCAGATGCAGTGAATGGAAATCTGTCTCCTGAAAACATTGCAGATAGGAGCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCTGATCGTCTCTCTGAGCTCCAAGATGCACGAGAAGACAATCACACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAATTGAAAGATGATAAGTATGTACGATGTTCTCGAATATACTCTTTAGCTAATGATCAACTTCAACATTGGACATCTGAATTGGCCCGATATAAAACATTGGCAGAATCTCTGCAGGCTGGCAGTGTTCATATTGCAAAATGGGAGAATGAACTAAATTTGAAGTTGGAGTCTGCTGATGCCGCAAGGCAGGTCCTTGACAATTCTGACCATAGGATTGATGAACTAGAGCTCCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTAGAAATTAAAATGGAAGAAGCTAAACAGGATACTGGGAGAAAAGATATCAAATCTGAGTTTCGTGTTATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCTCAATTAAAGCGATGGAAAGATGCAGCTCATGAGGCTGTATCATTACGTGAGAAAGCTCATTCACTAAGAGAAGTGTTGAGCACAAAGACAAGCGAACTTAAGAACCTTGCAAACAAAAGTGCTGAACAGGTTTTGGAAATCAGGTCTTTAAAAACGTTGATTGAAAAGTTAAAGAGGGAGAATCAGGAATTAGAATTTGTTCTGGACATGTATGGGCAAGAGAATTATGATAAAAGTTATTCAGAAATCAAAGAATCTGAAAGTAAAGCTCACTCTCAAGCTGAAATTCTGAAAAATGCTTTAGATGAGCATAGCCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAGCAAAGGCTTTCTGCCGCTGAAGCTGAAATAGAGGACTTGAGGGCCAAGCTGGATGCATCTGAGAGGGGTATTTTGGAGCTGACTGAGGCTATTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATACGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATCGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGTGTGAAGGCAAAACAGACGTACAACACTTTATTGTCCCAGAAGCAGGCCTTGACTAAGCAACTTCAACAACTTAATACTTCTATTGAAAACTCAAAGGCGAGGATTGCACACAGTGAAGAACAGATGAAAGCTATTCTATCTGAAGCCATTAAGTGTAATCAAGAAGAAAAACACCTTGCAGTAACCCTTGAATTTGCAAAGTGGGAATTGGCAGATGCTGAGAAGGAACTGAAGCTGCTCAAATCTTCTGTTTCGTCTTCAGAGAAAGAGTACGATCAAATTCAGAAAGACACTGAAGCTATTGAAATGGAATTGGAGAGTGAACGGAGTTCAAGGAAGAAGCTTGAGGAAGAATTAAGGGAATTGAACAGCCAAATTGCTGAGCTGACTTCTGAAACTGGAGAAACAACAATACAAAAACTCGAAAAAGAAATAAGGATATGCAAGAACATGATCAAGTGTACTGTCTGCACTGATCGTCCTAAGGAGGTTGTGATTGTCAAATGCTATCATTTGTTCTGTAATCCATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGTTTTGTAAAGATATGA 2742 0.3961 MRCNDAPGLLFECNKLLVTDAVVGFVQNFRIVMENSDHDEPEKKRPHLTSVSSRTPRNSINSPTTNKIADAGVLQFQNQQLVQQIDIQKHALHDLEEKIGELKGKQSSYDDLLIALNQHWIQLVDDMILLAIQAGRGKGKDTLQYLTDIDTPKGSLPSCPAEDIFLCRLIQKDSIKGISDDEITSSVEEALALRQSSTSELFKLLKDIIDDQMERSGSIAQVLHGDLSSEDAISLMTKIDDMMKEEANNLQEVIDTLHAKHKEYTVGIQSSVNECIQDQSDIKHLAGELDEVIAELEESRRKLVNLEMQKDAAIGMNSPNADAVNGNLSPENIADRSMGLRELKDSIEEAKIVDADRLSELQDAREDNHTLTKQFQDLQNELKDDKYVRCSRIYSLANDQLQHWTSELARYKTLAESLQAGSVHIAKWENELNLKLESADAARQVLDNSDHRIDELELQLQKCIIEKNDLEIKMEEAKQDTGRKDIKSEFRVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLREVLSTKTSELKNLANKSAEQVLEIRSLKTLIEKLKRENQELEFVLDMYGQENYDKSYSEIKESESKAHSQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRAKLDASERGILELTEAIKVKDAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKAKQTYNTLLSQKQALTKQLQQLNTSIENSKARIAHSEEQMKAILSEAIKCNQEEKHLAVTLEFAKWELADAEKELKLLKSSVSSSEKEYDQIQKDTEAIEMELESERSSRKKLEEELRELNSQIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00579 913 Gene3D - 700 863 - -
Spst8g00579 913 SMART ring_2 861 899 IPR001841 -
Spst8g00579 913 Coils Coil 672 692 - -
Spst8g00579 913 PANTHER RING FINGER PROTEIN-RELATED 39 913 IPR013956 GO:0004842|GO:0010390
Spst8g00579 913 MobiDBLite consensus disorder prediction 36 64 - -
Spst8g00579 913 SUPERFAMILY RING/U-box 860 904 - -
Spst8g00579 913 Coils Coil 282 316 - -
Spst8g00579 913 Coils Coil 714 755 - -
Spst8g00579 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 864 910 IPR013083 -
Spst8g00579 913 CDD RING-HC_Bre1-like 853 909 - -
Spst8g00579 913 Coils Coil 361 381 - -
Spst8g00579 913 ProSitePatterns Zinc finger RING-type signature. 876 885 IPR017907 -
Spst8g00579 913 ProSiteProfiles Zinc finger RING-type profile. 861 899 IPR001841 -
Spst8g00579 913 Coils Coil 78 105 - -
Spst8g00579 913 Coils Coil 616 657 - -
Spst8g00579 913 Coils Coil 439 480 - -
Spst8g00579 913 Pfam Zinc finger, C3HC4 type (RING finger) 860 902 - -
Spst8g00579 913 SUPERFAMILY Tropomyosin 715 861 - -
Spst8g00579 913 Coils Coil 770 839 - -
Spst8g00579 913 Coils Coil 546 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00579 Spst-Chr8 5463605 5482052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00579 834 908 RAD5 or RAD16-like Gene Family AT5G05130 26.190 5.03e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00579 K10696 - gmx:100796610 1465.29