Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00573 ATGATTTCTCAGTTGGGTTCAGATGGCTTCTTTCTTTACCACCGCGCCATGCTTCCAAAACCCCTTCCACAACAAATCCCATCTTTCATTTCCCTCAAAGTTCGATGCTTTCGCGCTTCTGAGCCAACCCCAGCTACCGCTCTTCCTCCTCCAAGTTCCGTTCCCTCGTCACGTTCCCTTAAACGGGTCTCTCGCCTCTTGAAGACCGAACTTCAACGCGCTCTAATGGATTACCTGCATTTAACGCGCGGCTACACCTTCTCCGATGCCGAATACATTAGCAAGAACTCACCTCGTTTTGTTGAATCATTAGTGTCAATGATTGACGACAAAGACGACGTTCCCCGAACGTTGCGGAAGTTCTTCAGGTACAACCCAATTAACGAGTTCGAACCGTTTTTCGAGAGTTTGGGAATTGGCCCTTCTGAGTTGCATTTGTTTCTCCCCAATGGCATAATTTTCTTGGCTGATGATCATGTGTTGCTTGATAATTTCCATTCTTTGTGTAATTATGGGGTGCCAAGGAATAGAATGGGGAAGCTCTATAAAAAGGCAAAATATATTTTTGGATATGCTAGTGGGCTGTTAGAGTTAAAGTTGCAAGGTTATGAGAATTTGGGTTTGAGTAGATCAACTGTTGTGAAGCTTGTTGTTTGCTGCCCTTTGCTTTTGGTTGGTGATGTCAATTGTGAATTTGTTGCTGTGCTGGATTGGTTGAAGAGAATTGGGATTGAAAGTGAGTGGCTGGTGAATTACTTGTCTTGTTCAAGGACATATAGTTGGAAAAGAATGCTTGATACCTTGCAGTTTCTTCATAAAGTGGGTTATTCTGAGGAAGGAATCAACAATTTGTTTAGGGGAAATCCTAAGCTGTTGCTGGAAGGTATTGGGAAGAAGGTGTACTTATTTTTTGGTCGATTGGTTAAAGTTGGCGTTGAGATGCATGTGATTTATTCTTATTTAGTGGACTATCCCAATATCTTGTCATATAAGTGTGCGAAAAATATGTTGAGCGTGATTTGCTTTTTGTGTGCTATTGGAATGGGAAAAGATGACATTACTCATATTTTCTCTAAGTACTTGCATCTCTTGAGTACAAGTTCCTTGAAAGGTCATAAAACCGTTTGTCAGGAGTTAAAAGTTGGAAAAGCTGATTTGTGCCAAATCATACAGGATGATCCATTGAAGCTAATTAGCTTCGCATCAAAGCAGGAAAAAAAGGGCGATGGAAAGGTAGATAGTCACGACCCACGAAATTATTTGAAAAAAACAACTTTCTTGCTGAAATTGGGATATACTGAGAACTCTGAAGAGATGGCAAGAGCATTAAAAATGTTCCGAGGGAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTGGTAGAAGCGGGGTTGGACTATAATAGTGTGATCGAAATGATAAAACGAGCTCCTATGATTCTAAGCCAGAACAAAGCTATAATTAAAAGGAAGATTGATTTCTTAAGAAATGTTTTAGATTACCCACTAGAATGTCTCGTGGGATTCCCAACATACTTTTGCCATGATTTGGACAAAATTGTTGAAAGGCTTTCAATGTATGCATGGCTGAAGGAGAGGAATGCAATAAACCCTACGTTAACCTTGAGTACCATAGTTGCATCCAATGATAAACGCTTTGTAAAGTACTTTGTGAATGTGCACCCTCAAGGTCCAGCCGTCTGGAAGGGTTTAAAAAGGTTATCTAATAAAGATAAGAACTAA 1743 0.4039 MISQLGSDGFFLYHRAMLPKPLPQQIPSFISLKVRCFRASEPTPATALPPPSSVPSSRSLKRVSRLLKTELQRALMDYLHLTRGYTFSDAEYISKNSPRFVESLVSMIDDKDDVPRTLRKFFRYNPINEFEPFFESLGIGPSELHLFLPNGIIFLADDHVLLDNFHSLCNYGVPRNRMGKLYKKAKYIFGYASGLLELKLQGYENLGLSRSTVVKLVVCCPLLLVGDVNCEFVAVLDWLKRIGIESEWLVNYLSCSRTYSWKRMLDTLQFLHKVGYSEEGINNLFRGNPKLLLEGIGKKVYLFFGRLVKVGVEMHVIYSYLVDYPNILSYKCAKNMLSVICFLCAIGMGKDDITHIFSKYLHLLSTSSLKGHKTVCQELKVGKADLCQIIQDDPLKLISFASKQEKKGDGKVDSHDPRNYLKKTTFLLKLGYTENSEEMARALKMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMILSQNKAIIKRKIDFLRNVLDYPLECLVGFPTYFCHDLDKIVERLSMYAWLKERNAINPTLTLSTIVASNDKRFVKYFVNVHPQGPAVWKGLKRLSNKDKN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00573 580 Pfam mTERF 448 553 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 Pfam mTERF 268 497 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 Gene3D Transcription termination factor 3, mitochondrial 100 232 IPR038538 -
Spst8g00573 580 Gene3D Transcription termination factor 3, mitochondrial 302 569 IPR038538 -
Spst8g00573 580 SMART mt_12 319 349 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 SMART mt_12 214 245 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 SMART mt_12 503 534 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 FunFam mTERF family protein 107 258 - -
Spst8g00573 580 PANTHER CGI-12 PROTEIN-RELATED 70 561 IPR003690 GO:0003690|GO:0006355
Spst8g00573 580 FunFam Transcription termination factor MTEF18, mitochondrial 303 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00573 Spst-Chr8 5424764 5426506 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst8g00573 mTERF 4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00573 - - gmx:100803162 943.725