Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00571 ATGCTTCAAACAAGTGCCCTTAGTAAAATGCACTCATCCCTAATGAGCAAAAGGTTATTCTTCCAAATGATTTTCCACCACAATCAAAACCACCCCTTTCTCGTCTTCCATAGTTCGTATAAAAAACCCCTAACAACACAAAACCCATTTTCCCTTTCTCCCAAAGTTCCAAGCTTTCCTAGTTCTACATCTACACATGTTCTCTCGCACTTTTCCGTGAAACGGTTATCTCGGCGGGTAAAGCGGAACGTGCAGGATGTGCTGTTAGATTACTTGCATTCATGGAGGGGATACAACTTCATGGATGCTGAGTTCATTAGCAAAAACTCACCATCTTTTGTTCAAGGTTTGGTGACAAAGTTTCATGGGCATGAGGATGATGTAGCCACGTGTTTGAGGAAATTCCTACGGTACAATCCCATTAATGAGTTTGAACCATTCTTTGAGAGTTTGGGGATTAGCTCTCGCGAGTTGCCTTTGTTTCTCCCACGTGGTTTGATCTTTTTGTCTGATAATCATGTTTTGCTTGCCAATTTCCATGCTTTGAGTAATTATGGAGTTCCAAGGAATAGGGTAGGGAAAATTTATCGAGAGGCAAAAGAGGTTTTTGGGTATTCTAGTGGATTGTTGTTGTCGAAATTTCGAGTTTATGAAAATATGGGTTTGTGTAGATCCATGGTCATCAAACTTGTTGTTTGTTGCCCTTCACTTTTGGTTGGTGAAACAAGCATTGAATTGGCCATGGTTCTGGATTGGTTGAAGAAAATTGGTATTGGGCATGATTGGATTGGGAATTACTTGTCTTGTTTGAAAACATATGATACAAGAAGAATGCTTGATGCTATGCAATTTCTTCATAAAATGGGCTATTCTGAAGAGCAGATGCACAATTTCTTCAAGGAAAACCCTGCATTATTACTAGAAGGTCTTGAGAAGAAGGTGTATGTATTTTTGGGTCTAGCACTTAAGTTAGGTCTCAATAAGAATGTGATTTGTTCTTGTTTTGTAGAATATCCCCATGTCTTGCCTAATAAGTGTGCAAAAAATCTTTTGGGAGTGATTGGTTTTTTGCATTATGTTGGAATGAATATGGATGACATTTCGTGCATTTTGTCCAACCACATGCAACTCCTGAGCTCACATCCCTTGAAAGGTCCTAAAGCTGTTTGTTTGCAGTTAAAAATTAGAAAAACTGATTTATGCCAAATCATAAAGGATGATCCACTGAAGCTAATTAGTTTGGCTTCAAAACTCACACAGAATACTAATTTACAGTTATTGACTGATGACCCATGTAAACATTTGGGGAAAACAGCATTCTTGCAGAAGTTGGGATATGTTGAGAACTCCGAGGAGATGGCAAAAGCAATTAGACGATTCCGGGGGAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTGGTTGAAGCTGGTTTGGACTTTAACATTGCAATCAAAATGATAAAATGTGCACCTATGATTCTAAACCAGAACAAAATTGTGATTCAAAAGAAGATTGATTTCTTAAGAAACATTTTAGGTTACCCTTTAGATTGCGTCGTGGCATTTCCAGCATACTTGTGCTATGATTTAGAGAGAATCATGCTCAGATTTTCAATGTATAAGTGGGTGGCGGAAAGGAATGCAGCAAAGCCTATGATGGCCTTGAGCACTATCCTTGCATCCTCTGATGAAAAGTTTATAAAATACTTTGTGAATGTACATCCTGAAGGTCGAATCTTCTGGGAAGGTCTAAAGAAGGCATTACTAGAAGATGAGAACCAACTTTTCCTTTAA 1797 0.3856 MLQTSALSKMHSSLMSKRLFFQMIFHHNQNHPFLVFHSSYKKPLTTQNPFSLSPKVPSFPSSTSTHVLSHFSVKRLSRRVKRNVQDVLLDYLHSWRGYNFMDAEFISKNSPSFVQGLVTKFHGHEDDVATCLRKFLRYNPINEFEPFFESLGISSRELPLFLPRGLIFLSDNHVLLANFHALSNYGVPRNRVGKIYREAKEVFGYSSGLLLSKFRVYENMGLCRSMVIKLVVCCPSLLVGETSIELAMVLDWLKKIGIGHDWIGNYLSCLKTYDTRRMLDAMQFLHKMGYSEEQMHNFFKENPALLLEGLEKKVYVFLGLALKLGLNKNVICSCFVEYPHVLPNKCAKNLLGVIGFLHYVGMNMDDISCILSNHMQLLSSHPLKGPKAVCLQLKIRKTDLCQIIKDDPLKLISLASKLTQNTNLQLLTDDPCKHLGKTAFLQKLGYVENSEEMAKAIRRFRGRGDQLQERFDCLVEAGLDFNIAIKMIKCAPMILNQNKIVIQKKIDFLRNILGYPLDCVVAFPAYLCYDLERIMLRFSMYKWVAERNAAKPMMALSTILASSDEKFIKYFVNVHPEGRIFWEGLKKALLEDENQLFL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00571 598 PANTHER CGI-12 PROTEIN-RELATED 278 575 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 Pfam mTERF 282 409 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 Pfam mTERF 144 240 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 Pfam mTERF 464 567 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 Gene3D Transcription termination factor 3, mitochondrial 134 316 IPR038538 -
Spst8g00571 598 Gene3D Transcription termination factor 3, mitochondrial 317 579 IPR038538 -
Spst8g00571 598 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 SMART mt_12 485 516 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 SMART mt_12 193 223 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 SMART mt_12 517 548 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 SMART mt_12 332 363 IPR003690 GO:0003690|GO:0006355
Spst8g00571 598 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00571 Spst-Chr8 5419860 5421656 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst8g00571 mTERF 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00571 - - aprc:113846643 845.884