Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00532 ATGGATAACAGCAAACATGGGAGTGAGCTTCAAATAGTAGCAAATCACAGGCTTGCAGCAGGGGTGTATGGAAGGAATGAAATGTCTGATGAGGGGTGTCAAATTTCCAGAGCAATAGTTTTGGATAACACAATGGCCACTACAGCCAAGAAGTACTTCTTCAAAGTCTTCTTTCCAGAGAAACACACTGAAAAAATAGTTATCCCTAGTTCTTTTGTGAAGTCTACACGCTTAGGAAGAAGGAGGATCCCCGAGGATGTGATCCTCAGAAATGTTAGTGGGAGAGTTTGGTGTGTCAAAACTCGTCTCATTGGACACAAAATCTACTTTCAAGAGGGTTGGAAGGTTTTCCAAGAAGAAAACTGTATAGGAAAAGAAGATTTTCTACTTTTTAAGCATGATGGGACCAATGTATTCAAGGTGGTAATTCTTGAACAATCATCACGGTGTGAAAGGAACGAAGTTGAAGAAAATGAGGTGATAGATATCACCGAAGAGGAAGAGCGTGAACAAACTGAGGACGAGGATGAGTGTTTTGACGATGAAAACAGCTATGATAATTGTACACAAATGGAAGAAGAGAGTGAAAAAGAACACATGAGGAGTCAAAGTAATCGTAGTAGAGCCAGCAACACAACAAGTTCCACCCCCAAAGGTCCTCATCTTGAAGACTATGAATTTGATCCACAAATGTACATTCAGCCGGAAAATCCATACTTTGAAGCAAAACTGTATAAAAATAGACCCAACGAATTGCATGTTCCAGCAAATGTATTTAAAGATTTATCCCTTACTTTTCCACAAGAGATCACCCTTTCACGTTGTCTATGCTTCCAAAGCGAGGATATTCAAAGCAATGAATTACGACAAAATCATTTCGGCTTGTCACAACAGACACCAATGTATTCGGAAGTAACAAAGGTGTCTGAGTGGCAAGATGGTCGAGTATGCCTTAAAGGGTGGGCAAACTTTTGTACAAAGAACAAGATCAAAGAAAATGATGCATGCATCTGTGAAATTGTATCAGGGGAAGACAGAATAGTAAGAAAATTTTGGGTGCACGTGCTTGGTGCTACGAACGGATGA 1086 0.4006 MDNSKHGSELQIVANHRLAAGVYGRNEMSDEGCQISRAIVLDNTMATTAKKYFFKVFFPEKHTEKIVIPSSFVKSTRLGRRRIPEDVILRNVSGRVWCVKTRLIGHKIYFQEGWKVFQEENCIGKEDFLLFKHDGTNVFKVVILEQSSRCERNEVEENEVIDITEEEEREQTEDEDECFDDENSYDNCTQMEEESEKEHMRSQSNRSRASNTTSSTPKGPHLEDYEFDPQMYIQPENPYFEAKLYKNRPNELHVPANVFKDLSLTFPQEITLSRCLCFQSEDIQSNELRQNHFGLSQQTPMYSEVTKVSEWQDGRVCLKGWANFCTKNKIKENDACICEIVSGEDRIVRKFWVHVLGATNG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00532 361 MobiDBLite consensus disorder prediction 190 204 - -
Spst8g00532 361 MobiDBLite consensus disorder prediction 158 189 - -
Spst8g00532 361 CDD B3_DNA 51 144 IPR003340 GO:0003677
Spst8g00532 361 MobiDBLite consensus disorder prediction 205 219 - -
Spst8g00532 361 ProSiteProfiles B3 DNA-binding domain profile. 51 147 IPR003340 GO:0003677
Spst8g00532 361 Pfam B3 DNA binding domain 53 143 IPR003340 GO:0003677
Spst8g00532 361 PANTHER B3 DOMAIN-CONTAINING 46 344 - -
Spst8g00532 361 SUPERFAMILY DNA-binding pseudobarrel domain 307 357 IPR015300 -
Spst8g00532 361 Gene3D - 43 150 IPR015300 -
Spst8g00532 361 SMART B3_2 53 147 IPR003340 GO:0003677
Spst8g00532 361 MobiDBLite consensus disorder prediction 154 224 - -
Spst8g00532 361 Gene3D - 226 358 IPR015300 -
Spst8g00532 361 SUPERFAMILY DNA-binding pseudobarrel domain 50 146 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00532 Spst-Chr8 5059352 5063363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00532 53 356 B3 DNA Binding Superfamily AT3G06160 26.706 1.40e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst8g00532 B3 2.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00532 - - gmx:100810634 397.897