Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00528 ATGGGTGCTTATGATCAAGTTTCCCTGCGGCCTTCGGATTCTTCTAGAAAGAAGAGGAAAAGTAGGAGCAGAGGGGATGGTTCTAGATCTGTGGCCGAGACTATTGCAAAGTGGAAGGAATACAATGAGCATCTTTATTCTGACAAAGGTGATGGTAGATCAACCCGTAAAGCTCCGGCTAAAGGTTCAAAGAAAGGATGCATGAAAGGTAAAGGAGGACCTCAAAACTATGACTGTAACTACAGGGGAGTCAGGCAGAGAACTTGGGGAAAATGGGTTGGTGAGATTAGGGAGCCAAATAGAGGCAGTAGGCTTTGGTTGGGAACTTTTTCTACTGCACAAGAAGCTGCTCTTGCCTACGATGAAGCAGCTAGAGCCATGTATGGTCCATGTGCACGCCTCAACTTCCCCGACATCTCAGATTATGCTTCTGTCAAGGAATCGTTTAAGGCCTCTTCCTTGGCTGCATCATCTTGTTCCTCGGCTGCATCGGACACTACTACTGCATCCAATCGATCAGAGGTTTGTGCAGCTGAGGATGCTGAGGATGCTAAGGAGAATCCTCGACCTATCCATGATAAGATTAATTATAATGATTGCCACAAGGCTTATGAGTATCCCACACCAACTAGCAGAATGAAGCTAGAGCCGAAGGATGAAGCTGTGGATCACTCAGACCCGGGGCCTGGAGAAGGAACACATGACACCCGACAGGTTGCAGAGGATGTAAGCAAAGATCAGGTGGACTTTTCATGGATTGATGCTTTTGATTTTAATGATGATTACTTGAAGAGCTTTTCCACGGATGAGTTATTTCAGGTGGATGAACTCTTGGGGCTTATAGATAATAACCCAGTTGATGAATCCGGGATGATGCAAGGTTTGGATTGTGGACAAATTGGTTATCCTGGAGATGGTAATCCTCAGCTTGGTGATACATCTTCAAGCTTTTTCTACCAGTTGCAAAATCCAGATGCCAAGTTGTTGGGAAGTTTGCCTCATATGGAGCAGACCCCATCAGGTGTTGATTATGGATTAGATTTCATGAAGACAGTTGTGCCAGAGGACTATAATGGTGGAGGGGAAGAACCGCAATTTCTTAATTTGGACGATCTTCTGAACCATGATTCAAATGGAATGGAAGCAAGCAGGGAATGA 1158 0.4516 MGAYDQVSLRPSDSSRKKRKSRSRGDGSRSVAETIAKWKEYNEHLYSDKGDGRSTRKAPAKGSKKGCMKGKGGPQNYDCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPDISDYASVKESFKASSLAASSCSSAASDTTTASNRSEVCAAEDAEDAKENPRPIHDKINYNDCHKAYEYPTPTSRMKLEPKDEAVDHSDPGPGEGTHDTRQVAEDVSKDQVDFSWIDAFDFNDDYLKSFSTDELFQVDELLGLIDNNPVDESGMMQGLDCGQIGYPGDGNPQLGDTSSSFFYQLQNPDAKLLGSLPHMEQTPSGVDYGLDFMKTVVPEDYNGGGEEPQFLNLDDLLNHDSNGMEASRE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00528 385 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Spst8g00528 385 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Spst8g00528 385 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Spst8g00528 385 CDD AP2 79 138 IPR001471 GO:0003700|GO:0006355
Spst8g00528 385 MobiDBLite consensus disorder prediction 46 77 - -
Spst8g00528 385 Gene3D AP2/ERF domain 80 138 IPR036955 GO:0003700|GO:0006355
Spst8g00528 385 MobiDBLite consensus disorder prediction 212 238 - -
Spst8g00528 385 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Spst8g00528 385 MobiDBLite consensus disorder prediction 1 31 - -
Spst8g00528 385 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Spst8g00528 385 FunFam Ethylene-responsive transcription factor 2 79 138 - -
Spst8g00528 385 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
Spst8g00528 385 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 338 - -
Spst8g00528 385 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00528 Spst-Chr8 5015179 5016336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00528 17 370 AP2-EREBP Transcription Factor Family AT2G40340 40.556 8.51e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g00528 AP2 1.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00528 8 5015179 5016336 Spst8g00528 8 5015179 5016336 ECH