Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00527 ATGTGCAATGTCTTTACTCTTCTAACCAGCACAGCATCATTTGGATGCATAGAAGCTTACAACATTGCCTTGTTGGCTGTCACAATCATGTCGCACAGGAAGAGACGTTTAGATCAACTGAAGCATTCCATCAATGTTCACCCCTTTGAAGCAGTTGCCTTTGGCTCATGGCAAACTGTGGATTTCATAAAGATTGAGGCAGGAACTATGTCCATGCATTTTGTAGATAGTAACCATGTGGTGACTATGGAAAAAGGACCCTTCTCAGACATTAGGGTAAGGTCAAGGAAAGCTACTTTAACTGATTGCTCCCGTTTTCTGCGTCCTGGAGTTGACGTATGTGTGCTATCTGCCCCTCAACAATCTAATGATTCAGATGCAATTGTTATTGATCCAGTTTGGAGTGATGCTAAAATAAGCTCTGTACAAAGAAAACCTCATGACTCTGAGTGCTCGTGTCAATTTTTTGTCAATTTCTATGTTCATCAAGGTTCACTTGGTGCTGAGCTAAGAACTATTAGCAAGGAGATTAAAGTAGTTGGAATCAAACAAATATCCATCCTCCAGAAACTTGAAAATATTCCTTGTGAAGATCAGCACTATCGGTGGGCAACATCTGAGGACTGTTCCATTATATCACACACTAAATTGCTTCTTGGAAGAGTGTTATGTGATCTTTCATGGTTAGTCGTTGCATCAGTTTTAAAGAAGTTTTCATTCTGCGTAAGATCTTTAGAAGAAAAGCTAGTTTATCAAATTTTGGGAAGGGATACCGTGAGCACTTCATTGAACAAAGAGTCTCACATTGATGTTGTGAATTTCAGAACAGAAAATGGCATGTTAGTACCGATTGTTTCTCAAGTAGCTACACCTATTGATCATGTACAGGAGTCTCATGAAGAAAAATTATTACTATGCTATAATGTTGACGGCTTAAGGCGTTCCAAGCGCCGGAATGTACAACCAGAGCGTTACCTTGGTTGTGATAATGTTTCTGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCAGTGAAAATAGACACATGGAAAGATGATGACGACGAGGACGAAGAACTACATATGCCATTAGCATACTTGTTTGGTTTGGACAAGAACTCTCTAAAAGGGGCTACTGAGAATCGTCAAAAGATTAAGAAGGTGAGTTCGTGCCGTGAGCTTGTGGTGTTCAAAACGAGGAAGGCTAAAAACCAGAAGGTAAAGTTAGGAGAAGATGATCAGAATGAACGTCAAAATCAACTTGCTATTATTCCTCTTCCTGATCAAGATGATCCACTACTCGTTGAACATTGTGATGATCTGGATGACAAGCTTACTAGAAGTTATGGTCATGATTCCCCTGAACGTTCTTCCAAATATTATCATCTAAGTAATATGACTGAATCAAAGAGGAAAGATAATAAATTGTTAAATTTTGAGCCTCATAACCATCCTGCAAATTCAGATGATGTAGAAAAGAGTGATGATTTGTCATCAAGATATCATTATAGTTATGGTGCCCCTAAGTCACAGAGGAAGAGTTTATGTGGTTTGGATGATATGGTGGATCTTGGAAATAAATGGGAAGGGATTAGATCCAATAAAGGAGTTAAAAGGAAAAAATATCATGCAGCATATTCAAGAAGTAGAGATCATGAAGAAGAAAAAAGATACAATTATAAAGACAGAACACTAAATGCAGCTGCCTACAAGGATTTGATAAACTCGTACTTGAAGAATATTAACACAAGACCGACACAAGAAGAACCATCTATCACTGACCAGTGGAAACAAAGCAACACAACTAGTAGCATTGGGCAAAATATGGAAACAGAAATACTTGGTGAAGAAGAGGATGCGGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTAGAAGTATCATTGGCATCGTGTTATCTAGAAGAGGATTCAAATGCTCCTGTTATCACTGAGGCTGTGGAAAAGCCAAATGAAGGCTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATCTACTGCTATAGATGTGGCTTCGTGAGCACTGAGATCAAATATATTACACCACCCTTTATTCAACATTCGGTATGGCACCAAGAGGAGAAGCACAATGCTGAAGAAGATTCACGAACAAAGGCTGATGAGGATGATGACTTGGATCTTTTCCCCACCCGAGATTCTCCCGAGGGACCTGTGTCTCAAGCAAGTGATAACGTTTGGGCATTGATTCCCGAACTTCGAACAAAGTTGCATGCCCATCAAAAGAAAGCCTTTGAGTTTCTTTGGCAAAACATTGCAGGTTCCATGGAACCCGGGCTTATGGAAGCAGCATCCAAAAGAAGAGGTGGCTGTGTGGTATCTCATACTCCTGGTGCGGGAAAAACTTTTCTCATTATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGAAAGAGGCCTCTAGTCCTTGCTCCAAAAACAACACTCTATACTTGGTACAAGGAATTTATCAAGTGGGATATTCCTATACCAGTGTATCTCATTCACGGTCGCAGAACCTACCGGGTATTCAAGCAGAAATCACCGGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCACACCCCAGTGTTCTAATCATGGGTTATACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTATTGAGGGAAAGCCCTGGAATCATGATACTGGATGAAGGGCACAATCCCCGAAGCACTAAATCAAGGTTGAGAAAGGTTTTGATGAAAGTACAGACAAAATTGAGAATACTGCTTTCTGGTACATTGTTTCAAAACAATTTCTGTGAATACTTCAACACTCTGTGTTTGGCAAGACCAAAGTTTATTCATGAAGTACTGAAAGCATTAGACCCGAAATACAGGAGGAAAGGAAAAGTGGCAAAAAAAGCAAGTCATTTATTAGAGTCACGGGCTAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATTGATTCAGGCAAAGGTAGGGAGAGACAGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTACAAATTTATACGTTGCTAATGAATTCAACTGATACACAACATGAGATTTTGCTTAAACTGCACAAGAAAATGGCCGAGTGCAATGGTTACCCTCTGGAGCTGGAGCTTTTGATAACTCTTGGGTCAATACATCCTTGGTTGGTCAAAACAGCAGTATGTGCTGAGAAGTTTTTTACTACTGAGCAATTGATGGATCTAGAAAAATGCAAATTTGATCTAAAAATAGGATCCAAAGTAAGATTTGTTTTGAGTCTTGTGTACCGTGTTGTAAAGAAGGAGAAAGTTCTTATATTTTGTCACAATATTGCACCTGTCAAGTTATTCCTGGAATATTTTGAGAAGTACTTTGGATGGCAAAGAGGTAAGGAAGTGTTGGTACTAACTGGCGAACTAGAGCTCTTTGAAAGAGGAAGGGTAATGGATAAGTTTGACGAGCCTGGCGGAGTAGCAAAGATACTCCTAGCTTCTATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCTCGGGTGATTATGTTGGATTCAGAGTGGAACCCTTCAAAAACTAAGCAAGCCATTGCTCGTGCCTTTCGTCCTGGTCAGCAGAAGGTTGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATATTCAGTGAGGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGGGAAATGGTTGCGGAGGACAGGTCTAAATCGTTCCATATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA 4005 0.3985 MCNVFTLLTSTASFGCIEAYNIALLAVTIMSHRKRRLDQLKHSINVHPFEAVAFGSWQTVDFIKIEAGTMSMHFVDSNHVVTMEKGPFSDIRVRSRKATLTDCSRFLRPGVDVCVLSAPQQSNDSDAIVIDPVWSDAKISSVQRKPHDSECSCQFFVNFYVHQGSLGAELRTISKEIKVVGIKQISILQKLENIPCEDQHYRWATSEDCSIISHTKLLLGRVLCDLSWLVVASVLKKFSFCVRSLEEKLVYQILGRDTVSTSLNKESHIDVVNFRTENGMLVPIVSQVATPIDHVQESHEEKLLLCYNVDGLRRSKRRNVQPERYLGCDNVSEIDVGSFRNRPPVKIDTWKDDDDEDEELHMPLAYLFGLDKNSLKGATENRQKIKKVSSCRELVVFKTRKAKNQKVKLGEDDQNERQNQLAIIPLPDQDDPLLVEHCDDLDDKLTRSYGHDSPERSSKYYHLSNMTESKRKDNKLLNFEPHNHPANSDDVEKSDDLSSRYHYSYGAPKSQRKSLCGLDDMVDLGNKWEGIRSNKGVKRKKYHAAYSRSRDHEEEKRYNYKDRTLNAAAYKDLINSYLKNINTRPTQEEPSITDQWKQSNTTSSIGQNMETEILGEEEDAEEVSEMDMLWRELEVSLASCYLEEDSNAPVITEAVEKPNEGCPHDFRMNEEIGIYCYRCGFVSTEIKYITPPFIQHSVWHQEEKHNAEEDSRTKADEDDDLDLFPTRDSPEGPVSQASDNVWALIPELRTKLHAHQKKAFEFLWQNIAGSMEPGLMEAASKRRGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMILDEGHNPRSTKSRLRKVLMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYRRKGKVAKKASHLLESRARKFFLDKIAKKIDSGKGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILLKLHKKMAECNGYPLELELLITLGSIHPWLVKTAVCAEKFFTTEQLMDLEKCKFDLKIGSKVRFVLSLVYRVVKKEKVLIFCHNIAPVKLFLEYFEKYFGWQRGKEVLVLTGELELFERGRVMDKFDEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASSTNK 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00527 1334 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 82 1330 IPR044567 GO:0080188
Spst8g00527 1334 Pfam SNF2-related domain 763 1019 IPR000330 GO:0005524|GO:0140658
Spst8g00527 1334 SMART helicmild6 1163 1252 IPR001650 -
Spst8g00527 1334 Gene3D - 732 1018 IPR038718 -
Spst8g00527 1334 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1139 1299 IPR001650 -
Spst8g00527 1334 MobiDBLite consensus disorder prediction 445 467 - -
Spst8g00527 1334 MobiDBLite consensus disorder prediction 701 721 - -
Spst8g00527 1334 Gene3D - 1108 1326 IPR027417 -
Spst8g00527 1334 CDD DEXHc_ATRX-like 752 982 - -
Spst8g00527 1334 CDD SF2_C_SNF 1127 1263 - -
Spst8g00527 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 703 990 IPR027417 -
Spst8g00527 1334 SMART ultradead3 748 982 IPR014001 -
Spst8g00527 1334 MobiDBLite consensus disorder prediction 701 735 - -
Spst8g00527 1334 Pfam Helicase conserved C-terminal domain 1135 1251 IPR001650 -
Spst8g00527 1334 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 777 977 IPR014001 -
Spst8g00527 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 922 1290 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00527 Spst-Chr8 5001279 5006830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00527 1131 1270 RAD5 or RAD16-like Gene Family AT5G43530 34.965 6.88e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst8g00527 SNF2_N 1.2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00527 K10875 - gmx:100811703 2220.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00527 8 5001279 5006830 Spst8g00527 8 5001279 5006830 ECH
Spst8g00527 8 5001279 5006830 Spst8g00527 8 5001279 5006830 PCT