Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00523 ATGGGTGGAAATTCCCCTTGTGCCTCATGTAAATTGCTAAGACGCAGGTGTATAAAAGATTGCATCTTCGCTCCTTATTTTCCTTCTGATGATCCTCAAAAGTTTGTTATAGTTCACAAGATTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTTCCAGTTCATCAGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAGTGCAAGAATGAGAGACCCTGTGTATGGCTGTGTTGGCGCCATATCCTACTTGCAAAATCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTTGCTCAAGCAGAGATCCTCTGCGTCCAGATGAATCACGAGTCACTGATGCCACCCTCAGAAACTGATTTACATCACAAGTCTTACCTTCTTCAGAATAACCTCTCTCAGATTCCTGACTTTAACACTCCTAGTAATGTAATTCACCATTCTCCCAGTCCTCTTTGA 468 0.4274 MGGNSPCASCKLLRRRCIKDCIFAPYFPSDDPQKFVIVHKIFGASNVSKMLQELPVHQRADAVSSLVYEASARMRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCVQMNHESLMPPSETDLHHKSYLLQNNLSQIPDFNTPSNVIHHSPSPL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00523 155 Coils Coil 85 105 - -
Spst8g00523 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 128 - -
Spst8g00523 155 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Spst8g00523 155 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00523 Spst-Chr8 4930330 4930899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00523 3 131 AS2 family AT2G30130 78.195 3.54e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst8g00523 LOB 7.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00523 - - gmx:100812780 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00523 8 4930330 4930899 Spst8g00523 8 4930330 4930899 ECH
Spst8g00523 8 4930330 4930899 Spst8g00523 8 4930330 4930899 PCT