Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00521 ATGCTTGACAAACTGGGTGGTGCTTTTGCGCCCAAACCCTCATCTGGACCCCACAAATCGAGGGAGTGCCTCCCCCTCATACTCATCCTGCGAAACCGGTTGAAGTATGCTCTGACCTACCGTGAAGTCATTGCTATTCTGATGCAGCGACATGTTCTTGTCGACGGCAAAGTCAGGACAGACAAGACATACCCCTCTGGTTTCATGGATGTAGTATCCATACCTAAAACCAACGAGAATTTCCGCCTGCTCTATGATACCAAAGGCCGATTCCGTCTCCATTCAGTCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTAGGTCGGTGCAGTTTGGCCAGAAAGGTATTCCATACCTAAACACCTATGATGGTCGTACCATCCGTTACCCAGATCCTCTAATCAGAGCCAACGACACCATTAAGCTGGATCTTGAGGAAAACAAGATCGTTGATTTTATCAAATTTGATGTTGGGAATGTTGTTATGGTAACTGGAGGAAGAAACAGGGGTCGTGTTGGAGTGATTAAGAACAGGGAGAAGCATAAGGGTAGCTTTGAGACAATCCACGTTCAGGATGCCACTGGACATGAATTTGCCACTCGCTTGGGAAACGTGTTCACCATTGGCAAGGGCACAAAGCCTTGGGTGTCACTTCCTAAGGGTAAGGGTATTAAGCTATCCATCATTGAGGAAGCTAGGAAAAGGATTGCTGCTCAGCAAGCAACTGCCGCTTAA 741 0.475 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRIAAQQATAA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00521 246 FunFam 40S ribosomal protein S4 104 154 - -
Spst8g00521 246 SMART s4_6 24 88 IPR002942 GO:0003723
Spst8g00521 246 ProSiteProfiles S4 RNA-binding domain profile. 24 86 - -
Spst8g00521 246 CDD KOW_RPS4 157 211 IPR041982 -
Spst8g00521 246 Hamap 30S ribosomal protein S4e [rps4e]. 3 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Spst8g00521 246 FunFam 40S ribosomal protein S4 1 99 - -
Spst8g00521 246 Gene3D - 104 154 IPR038237 -
Spst8g00521 246 Coils Coil 231 246 - -
Spst8g00521 246 Pfam S4 domain 29 72 IPR002942 GO:0003723
Spst8g00521 246 CDD S4 33 94 - -
Spst8g00521 246 FunFam 40S ribosomal protein S4 157 227 - -
Spst8g00521 246 Gene3D - 1 99 IPR036986 GO:0003723
Spst8g00521 246 Pfam Ribosomal family S4e 77 151 IPR013845 -
Spst8g00521 246 Pfam KOW motif 159 192 IPR005824 -
Spst8g00521 246 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 236 IPR000876 GO:0003735|GO:0005840|GO:0006412
Spst8g00521 246 Pfam RS4NT (NUC023) domain 1 21 IPR013843 -
Spst8g00521 246 Pfam 40S ribosomal protein S4 C-terminus 194 240 IPR032277 -
Spst8g00521 246 PIRSF RPS4a_RPS4e 1 223 IPR000876 GO:0003735|GO:0005840|GO:0006412
Spst8g00521 246 Gene3D - 157 227 IPR014722 -
Spst8g00521 246 SMART kow_9 156 183 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00521 Spst-Chr8 4913269 4914785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00521 1 244 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 91.803 1.65e-174 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00521 K02987 - gmx:100795220 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00521 8 4913269 4914785 Spst8g00521 8 4913269 4914785 ECH