Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00513 ATGCTTCACAATCCACAGAATATTCTTTTCAATATCATAGATCATCTTGACTGGAAAGATATCGTTTATGAAGATGTCAAGCTCAAGAGCACCCCGGTTGCTGCTAAGACCAAGAGCCCAAAAGCGTTTTCTACTTTTGCATGTCTTCTCAGCGACAGCAAACGCGCTTTCAAGTCTCTTGGGTCCATACATTCATACAAACACTCACTAATATCAACCGAAGGTAATGCTCTTTTGAAGTTGAGACAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTTGATGATGACGCATCTTTTGACCCTTGTTATTGGTTTGGAGTTGAGTGCTCAGATGGAAGAGTTGTGGCATTGAATTTGAAGGATCTCTGCCTTGGAGGAACTCTGGCACCTGAGCTTCTGAAACTTGTCCACATAAAGTCCATTATTTTGCGGAACAACTCTTTCTATGGGACCATACCTGAAGCGTTTGCGGAGTTAAAAGAATTGGAGGTTTTGGATTTGGGATACAACAACTTCAGTGGACATCTACCTACAGATCTTGGGAGTAATATCTCACTAGCAATCCTTTTGTTGGATAACAATGAATTTCTTGTTGGTTTTTCTCCGGAAGTCAGTGAACTGAGGATGTTTTCTGAGTGTCAAGTAGATGAAAATCAGCTAAGTAATGCTGCTAAAATGCCAGCTTGTATAGAAACAGCCACCACATGGCATATTGGTCAAGGTAAAGGTACTCGTGGCCTACTAGAACATCGTAAACCATTTACTCGTGATCATGAAGACCCTCGTAGTCGTGCGGTTAATCCAAAACCTCAAAAGAACTCCTCTCCTCCCTCTGCATCACCACCAGTCTCAGCAAAATCCCCAGTATCAGAGCCAACTCCCTCCGGGAAAATTGCTTCTAAATCTCCTTCTCCCCATTCTACACCAGGATCTGGAGCATTATCTAAAACTAAAAAAAACACCTCATCAAAGGTTCATATTTTGGCTGGAGTCGTAGGTGGAGTTGTGTCTATTCTTTTTTCAAGCATTGGCATATATCTTTGTAAAACAAAGGTGACTAATGTCAGACCTTGGGTTACGGGCCTTAGTGGACAGCTTCAGAAGGCATTTGTAACTGGCGCGCAAAAGCTAAGGAGATCAGATCTTGAAGCAGCATGTGAAGATTTCAGTAATGTTATTGGTACTTCACCCATTGGCACACTGTACAAAGGAACTTTGTCTAGTGGCGTAGAAATAGCTGTAGCTTCTGTTTCGGTGATATCATCCAAGAATTGGTCAAAGACCTTAGAAGATCAATTTAGAAAGAAGATCGATACATTATCAAAAGTAAACCACAAGAATTTCGTCAATCTTATTGGGTACTGTGAAGAAGAGAAGCCTTTCACCAGAATGTTGGTTTTTGAATATGTCCCAAATGGAACACTATCTGAGCATTTGCATATAAAAGAGGCTGAGCACTTGGATTGGGTAACGAGGCTTAGAGTTGCAACGGGTATGGCTTATTGCTTGCAGCATATGCACCAATTGGACCCTCCTATGACCGTTAACAAGCTGAATTCTTCAGCTGTTTACTTGACTGACGACTATGCTGCCAAACTATCAGATTTGAGTTTCTCCTATGACATAGCCTCAGCTGAGACAAAAGCTATTGACATGCCAAAAGCAAGTCCAGAAAGTAACGTTTATAGCTTTGGTGTTTTGTTATTTGAGATAGTTACTGGTCGTCTCCCTTATTCAGTGGAACAAAGAGACTCACTTGAAAACTGGGCATCAAACTATTTACAAGGGAACCAACCCCTCAAAGATACGGTGGATCCAATTCTAGGATCTTACCAAGAGGATCAGCTGGAACAAGTTGCTGCATTGATTAAATGTTGTGTGCACCCTGATCCAAAGCAGAGATCAACAATGAAAGATGTCAGTGAGAGACTAAGAGAGATAACAAAGATAACACCTGAATCAGCAGTTCCAAAGCTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTTCTTCTTCAGAGCGCGTTGAAACCGGTGAAGCAGATTGCAATTAA 2064 0.4162 MLHNPQNILFNIIDHLDWKDIVYEDVKLKSTPVAAKTKSPKAFSTFACLLSDSKRAFKSLGSIHSYKHSLISTEGNALLKLRQRIVSDPFGALSNWVDDDASFDPCYWFGVECSDGRVVALNLKDLCLGGTLAPELLKLVHIKSIILRNNSFYGTIPEAFAELKELEVLDLGYNNFSGHLPTDLGSNISLAILLLDNNEFLVGFSPEVSELRMFSECQVDENQLSNAAKMPACIETATTWHIGQGKGTRGLLEHRKPFTRDHEDPRSRAVNPKPQKNSSPPSASPPVSAKSPVSEPTPSGKIASKSPSPHSTPGSGALSKTKKNTSSKVHILAGVVGGVVSILFSSIGIYLCKTKVTNVRPWVTGLSGQLQKAFVTGAQKLRRSDLEAACEDFSNVIGTSPIGTLYKGTLSSGVEIAVASVSVISSKNWSKTLEDQFRKKIDTLSKVNHKNFVNLIGYCEEEKPFTRMLVFEYVPNGTLSEHLHIKEAEHLDWVTRLRVATGMAYCLQHMHQLDPPMTVNKLNSSAVYLTDDYAAKLSDLSFSYDIASAETKAIDMPKASPESNVYSFGVLLFEIVTGRLPYSVEQRDSLENWASNYLQGNQPLKDTVDPILGSYQEDQLEQVAALIKCCVHPDPKQRSTMKDVSERLREITKITPESAVPKLSPLWWAELEISSSERVETGEADCN 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00513 687 Gene3D Phosphorylase Kinase; domain 1 365 473 - -
Spst8g00513 687 SUPERFAMILY L domain-like 80 225 - -
Spst8g00513 687 PANTHER PROTEIN MALE DISCOVERER 2 68 676 - -
Spst8g00513 687 FunFam Inactive receptor-like serine/threonine-protein kinase 365 473 - -
Spst8g00513 687 Gene3D Ribonuclease Inhibitor 70 241 IPR032675 -
Spst8g00513 687 Pfam Leucine rich repeat N-terminal domain 73 114 IPR013210 -
Spst8g00513 687 MobiDBLite consensus disorder prediction 288 323 - -
Spst8g00513 687 FunFam Nuclear pore complex protein NUP107 71 230 - -
Spst8g00513 687 MobiDBLite consensus disorder prediction 245 323 - -
Spst8g00513 687 SUPERFAMILY Protein kinase-like (PK-like) 378 648 IPR011009 -
Spst8g00513 687 ProSiteProfiles Protein kinase domain profile. 391 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00513 687 Pfam Protein tyrosine and serine/threonine kinase 394 648 IPR001245 GO:0004672|GO:0006468
Spst8g00513 687 Gene3D Transferase(Phosphotransferase) domain 1 474 660 - -
Spst8g00513 687 Pfam Leucine rich repeat 141 199 IPR001611 GO:0005515
Spst8g00513 687 MobiDBLite consensus disorder prediction 248 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00513 Spst-Chr8 4838732 4847380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00513 37 648 Receptor kinase-like Gene Family AT5G16000 26.006 6.43e-45 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Spst8g00513 PK_Tyr_Ser-Thr 3.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00513 - - gmx:100820416 926.006