Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00511 ATGGCAGCACCCCAAAGAGCAAATTTTGTGAACCATGAGAATGAACAGAAACGTCCTATTAAGGTGAGGGGCACAATGAATGATGTTCTATCTGCAATGATGATCTCCCAAGGCTTGTTTCCATCTGGATCTTTGCTAGATTCTTTGATTCACATATCCAAAGAAGTTGGCTCAATGGAGAAGTTTCCCTTCTTACACATAAGAAACGTTTCATCCATGACAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACGGATACTCCACTTCCTCCTTCTTCAATCCTGTGTCTCACAGAACTCTTCTCTGTGATAAGAAGAGCTAAAGTTTTGATCCAAGGTTGCAAGGATGGAAGTTCTCTTTGGAGTCTCATACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTTGTAAAGGAGATGGGAAGGGCCCTTGATATCCTTCCTTTGAGTTTGCTTAATGTAACATCAGATGTTAGGGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAAATACTCATTGATCCTAGAGAGCTTCAACGAAGAGAACAGATTATACAAATAATGGCCAACAATAGTTTACAAAACAAGAAGAACAAAGGGTTTATTGACTTTGGAAAAGTGGAAGAAATACTAAGCGGCATTGGTATGAGAACCACATCAGATTATGATGAAGAAATATCTAAGCTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTGCTAATCGTCTCCAATATAAACAACCTCATATCATTGGTCTCTTATTCCAAATCAATGATATTCAGAGATGGAGAGAGTGACAGAAATGAAGAAGATTGTAAGCCACTATCTTCATTTTTGTATAACAAAGTACATGATAGTTCTTCATCCTCTCAGTCCATGACACCTAATGTTCCTGACGAATTTCGTTGTCCAATATCACTTGACTTAATGAGGGACCCCGTGATTGTGTCATCAGGGCACACATATGATAGAACCTCAATTGCACAATGGATAAACTCTGGCAATCACACTTGCCCCAAAAGTGGGCAAAGGCTAATTCACACGGCTCTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCTATGACAACAATGTCCCAGTTCATGAGCCTAAGTCCGAGGGAAACAACAACAAGAACTCGAAGGAGGAAGCTATCGACCATATTTCTGCAAACAAAGCAGCTGCAGACGCTGTCAAAATGACAGCAGAGTTTCTTGTTGGAAAATTGGCTACTGGTTCTGCTGATATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGCATGGTTAACCGAGGTGTCATAGCTGAGGTAGGGGCTATTCCCTTTCTTGTAACACTTCTAGGATCTCAAGATTCGAGAATCCAAGAGCATGCAGTGACAACCTTATTCAACCTCTCGATATTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAGCATAGTGGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCCGCATCAATATATAGCTTGTCTATGGTGGATGAGCTCAAGGTGCAAATTGGAGGAAGACCAAGGGCAATACCTGCCTTAGTTGGACTCTTAAAAGAAGGCACTCCAATAGGGAAGAAAGATGCTGCATCTGCACTGTTCAATCTTGCAGTCTACAATCCTAACAAGGTTAGTGTTGTTAAGGCCGGGGCAGTTCTTGTACTGGTTGAGTTGCTGATAGATGACAAGGCTGGCATAACAGATGATGCACTTGCAGTGCTTGCTTCGCTCCTTGGTTGCTCTGATGGGCTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGACTGTGCAAAGAAGAGGGGGAAGTGGTGGCAAGGAGACTCTTGGCAAATCCAAGAAGCATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGATCTTTGAGAGCTAGGAGAAAAGCAGATGCACTGCTTAGGTTCCTCAATAGGTTCTGCTCTCAGCCTCATCATTCTGTTTGA 2121 0.4248 MAAPQRANFVNHENEQKRPIKVRGTMNDVLSAMMISQGLFPSGSLLDSLIHISKEVGSMEKFPFLHIRNVSSMTRRIKLLSSLFEEIQETDTPLPPSSILCLTELFSVIRRAKVLIQGCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDVREQVELLHKQAKRAEILIDPRELQRREQIIQIMANNSLQNKKNKGFIDFGKVEEILSGIGMRTTSDYDEEISKLEAEAQNQAGTGGLLIVSNINNLISLVSYSKSMIFRDGESDRNEEDCKPLSSFLYNKVHDSSSSSQSMTPNVPDEFRCPISLDLMRDPVIVSSGHTYDRTSIAQWINSGNHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVHEPKSEGNNNKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRGVIAEVGAIPFLVTLLGSQDSRIQEHAVTTLFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAASIYSLSMVDELKVQIGGRPRAIPALVGLLKEGTPIGKKDAASALFNLAVYNPNKVSVVKAGAVLVLVELLIDDKAGITDDALAVLASLLGCSDGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRFLNRFCSQPHHSV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00511 706 Pfam Armadillo/beta-catenin-like repeat 449 485 IPR000225 GO:0005515
Spst8g00511 706 PANTHER U BOX DOMAIN-CONTAINING 69 695 - -
Spst8g00511 706 Gene3D - 539 698 IPR011989 -
Spst8g00511 706 FunFam RING-type E3 ubiquitin transferase 512 699 - -
Spst8g00511 706 Pfam MCAfunc domain 65 176 IPR045766 -
Spst8g00511 706 SUPERFAMILY ARM repeat 417 695 IPR016024 -
Spst8g00511 706 ProSiteProfiles U-box domain profile. 307 381 IPR003613 GO:0004842|GO:0016567
Spst8g00511 706 Pfam U-box domain 308 378 IPR003613 GO:0004842|GO:0016567
Spst8g00511 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Spst8g00511 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 382 IPR013083 -
Spst8g00511 706 SMART Ubox_2 311 374 IPR003613 GO:0004842|GO:0016567
Spst8g00511 706 FunFam RING-type E3 ubiquitin transferase 307 381 - -
Spst8g00511 706 SMART arm_5 446 486 IPR000225 GO:0005515
Spst8g00511 706 SMART arm_5 405 444 IPR000225 GO:0005515
Spst8g00511 706 SMART arm_5 530 570 IPR000225 GO:0005515
Spst8g00511 706 SMART arm_5 571 611 IPR000225 GO:0005515
Spst8g00511 706 SMART arm_5 487 528 IPR000225 GO:0005515
Spst8g00511 706 SMART arm_5 612 653 IPR000225 GO:0005515
Spst8g00511 706 CDD RING-Ubox_PUB 309 361 IPR045210 -
Spst8g00511 706 SUPERFAMILY RING/U-box 296 383 - -
Spst8g00511 706 Gene3D - 390 538 IPR011989 -
Spst8g00511 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00511 Spst-Chr8 4828673 4830962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00511 43 701 U-box Gene Family AT3G46510 38.520 3.45e-127 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00511 - - gmx:100793498 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00511 8 4828673 4830962 Spst8g00511 8 4828673 4830962 ECH