Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00509 ATGCAAGCCCCAACCTGCGACCTGGCAAAGCCAATGGGCAAGGAAACTGCAAACACAAACACTATAGAAAAGTGGAAAGAAGATTTGAGAGCCATGAAGGGTTATGAGCCACGTTCAAGTTCCTCTTGTGCAGCCTGCAAGTTCTTGAAGAGAAGATGCATACCAAATTGTATATTTGCACCTTACTTTCGCTCTGATGAGTGCAAGAAATTCGCCAAGGTCCACAAGGTGTTTGGAGCTAGCAATGTGAGCAAGATCCTGATCGAAGTTCCTGAGGAGCAGAGAGAGGACACGGTGAATTCTCTTGCTTATGAGGCAGAAGCGAGGCTTAGGGACCCCATTTATGGATGCATTGGTGCCATAGCTCTACTTCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCTAAGGACCGTCTTGCTCGTTATGCTGCTGCTGCCACCACTCCTTCCACCACCACCACCACCGCCACCACCGATACCTTCAATTCCCATGTTAGTTTGCCACCCTTCCCTGAATTTTTCTCTTTCGCTGATTTCAATGACAACTTCTGCCACACCTCTTCCTCTCAATCTCCACCATTGACCAGACATGAATCGGTCGATGATTTCATTCAAATCCCTTATATATTGTGA 642 0.4704 MQAPTCDLAKPMGKETANTNTIEKWKEDLRAMKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPIYGCIGAIALLQRKMVELQHDLAIAKDRLARYAAAATTPSTTTTTATTDTFNSHVSLPPFPEFFSFADFNDNFCHTSSSQSPPLTRHESVDDFIQIPYIL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00509 213 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Spst8g00509 213 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Spst8g00509 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 155 - -
Spst8g00509 213 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00509 Spst-Chr8 4818970 4819672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00509 32 182 AS2 family AT3G11090 64.474 6.46e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst8g00509 LOB 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00509 - - gmx:100777635 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00509 8 4818970 4819672 Spst8g00509 8 4818970 4819672 ECH