Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00506 ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGTCACCACCGTCACATCCTCCACTCCCAGCCAAACATCTAACACTTCCAACAGCACCAACATCAACAACAAAAGCAATCGTAAATGCAAAGGTAAAGGTGGCCCTGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTTGCCGAGATCCGTGAACCACGTAAGCGCACACGCAAGTGGCTTGGCACCTTCTCCACCGCAGAAGATGCTGCCAGAGCTTATGACCGCGCGGCTCTCATCCTCTACGGTTCCCGGGCTCAGCTTAATCTCCAACCCCCTGGTTCCTCTTCGCAGTCTTCCTCTTCTCGCACCACCTCATCTTCCTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCCTCAAGCTTCGCTTTCAATTTTCCCTTCCACGCTGCCCTGCCCTATCCTTGCGGAGGCGCGTTTGCTAGCACTTTCAATTTCACCCCTCCCGTGTTGTGCCCTAAGGAGAATAGTAATAATATAGTGCATGTTCATCACTATCATCATCGTCCCCAGGAAGTGGTGCAAGAGCCTCACGCTCAATCAACATCATATCAAAATTCGGAATCTGATTTGAGTTTAGGTGGGAATAATACTACTGCTGATAGTTCAATTAGATCAACCTCGTACCAAAGGCGTGGTTGCAAGGATGATAACCGTTTGCATGTGCAAGATGGTGATTTATCGAATCGAGATAAACATGAGAACAGTGCTGTAGATGGAGTTAATTATGTTGGGGGTTCCGCTGAGTCTTCTCAGGTAAATATGGAGGCTTCTGTGGATCCGGATCTGTCTCTGGTGGGGACAGTGGGGCTTGGATCTTCGTCTTCTTTGTGGTCCTTGGTGAATGAGAATGATTACACTGGTAGTTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG 972 0.4887 MASLQPQPQETKPTVTTVTSSTPSQTSNTSNSTNINNKSNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAALILYGSRAQLNLQPPGSSSQSSSSRTTSSSSTQTLRPLLPRPSSFAFNFPFHAALPYPCGGAFASTFNFTPPVLCPKENSNNIVHVHHYHHRPQEVVQEPHAQSTSYQNSESDLSLGGNNTTADSSIRSTSYQRRGCKDDNRLHVQDGDLSNRDKHENSAVDGVNYVGGSAESSQVNMEASVDPDLSLVGTVGLGSSSSLWSLVNENDYTGSLWDYNDPFFFDL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00506 323 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Spst8g00506 323 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 256 - -
Spst8g00506 323 MobiDBLite consensus disorder prediction 111 136 - -
Spst8g00506 323 MobiDBLite consensus disorder prediction 195 259 - -
Spst8g00506 323 MobiDBLite consensus disorder prediction 1 41 - -
Spst8g00506 323 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Spst8g00506 323 CDD AP2 55 112 IPR001471 GO:0003700|GO:0006355
Spst8g00506 323 MobiDBLite consensus disorder prediction 43 57 - -
Spst8g00506 323 MobiDBLite consensus disorder prediction 197 231 - -
Spst8g00506 323 FunFam Ethylene-responsive transcription factor 2 55 113 - -
Spst8g00506 323 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Spst8g00506 323 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Spst8g00506 323 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Spst8g00506 323 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Spst8g00506 323 MobiDBLite consensus disorder prediction 1 57 - -
Spst8g00506 323 MobiDBLite consensus disorder prediction 232 259 - -
Spst8g00506 323 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00506 Spst-Chr8 4800942 4801913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00506 39 320 AP2-EREBP Transcription Factor Family AT2G40220 41.748 1.73e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g00506 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00506 K09286 - gmx:100779779 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00506 8 4800942 4801913 Spst8g00506 8 4800942 4801913 ECH