Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00504 ATGTTTATGGGTACTGTTAAGGGATCGTGGAGTCCTGAGGAGGACGAGATGCTAGAGAAATTGGTGAAGAAGCACGGCGCGCAAAAATGGTCCGTCATCTGCAAAGGCATTCCGGGACGCTCAAGCAAGTCCTGCCGACTGCGGTGGATCAACCAGCTGAGTCCGGACGTGGAGCACCGCCCCTTCACGCCGGAGGAGGACGACGTCCTCATCAAGGCGCGAGCCATTCACGGGAACAAGTGGGCCACCATCTCGCGCCTCCTCCCTGGCCGCTCCGACAACGCTATAAAGAATCGCTGGAACTCTAGCCTCCGCCGCTTCTGCGTGACGGAGCAGCCATCCTCGTCGTCGGCGTGGCCAAGCGCCAACTACCCCTCTCCCGTCGACCCCTTCGACCCGTTCGACCCTTCCTATCCTTTCAAGAAACAGTGCGTAAATGAAAGGAAAGAAAAGTCCATAGCGATTCCCGTTACAACGTCGCTGAGTCTCTCTCCGCCTGGGGAAAGATCAGATGCAGATGGAGATAGACAGGAGGAAGAGGAAAAATATTTTGAATCGAACCTGAATTACATTCTGGATCAGGAAAAGTTTCTTGGGATAGTCCGGCAAATGATAGCGATCGAGGTTAGAAATTACATGGATGCTTTGTGGCAACACGGAATGTACGGACCACCTTTTCCTCCATCGTCGTTATATTGGCCTCCCAGATATTGA 714 0.535 MFMGTVKGSWSPEEDEMLEKLVKKHGAQKWSVICKGIPGRSSKSCRLRWINQLSPDVEHRPFTPEEDDVLIKARAIHGNKWATISRLLPGRSDNAIKNRWNSSLRRFCVTEQPSSSSAWPSANYPSPVDPFDPFDPSYPFKKQCVNERKEKSIAIPVTTSLSLSPPGERSDADGDRQEEEEKYFESNLNYILDQEKFLGIVRQMIAIEVRNYMDALWQHGMYGPPFPPSSLYWPPRY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00504 237 CDD SANT 61 104 IPR001005 -
Spst8g00504 237 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Spst8g00504 237 MobiDBLite consensus disorder prediction 157 180 - -
Spst8g00504 237 SUPERFAMILY Homeodomain-like 4 100 IPR009057 -
Spst8g00504 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 108 IPR017930 -
Spst8g00504 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Spst8g00504 237 Pfam Myb-like DNA-binding domain 61 102 IPR001005 -
Spst8g00504 237 Pfam Myb-like DNA-binding domain 7 52 IPR001005 -
Spst8g00504 237 SMART sant 58 106 IPR001005 -
Spst8g00504 237 SMART sant 6 55 IPR001005 -
Spst8g00504 237 ProSiteProfiles Myb-like domain profile. 7 53 IPR001005 -
Spst8g00504 237 PANTHER MYB PROTEIN-RELATED 7 135 - -
Spst8g00504 237 CDD SANT 9 51 IPR001005 -
Spst8g00504 237 FunFam MYB transcription factor 7 58 - -
Spst8g00504 237 Gene3D - 61 106 - -
Spst8g00504 237 Gene3D - 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00504 Spst-Chr8 4769742 4770455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00504 3 114 MYB Transcription Factor Family AT4G37260 66.071 5.46e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g00504 Myb_DNA-binding 6.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00504 - - gmx:778069 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00504 8 4769742 4770455 Spst8g00504 8 4769742 4770455 ECH