Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00503 ATGGAGTTGTCACAAGACTTGCCTAGTTCTAGCCATTCAACTGGATTAGGCATCAGGGGATCTCTTCGTGAATTGTTCATCAAACTAATCGAATACCTTGGCATTGAATGGGAAATAAAAAGCTCACAAAGCCAGGCACAAGCACTAGAATGGTTTCTAATTGTGCATATGGGAAGTTACTACTATTCTGGGTGGCCTCTTGCCACCAACGTGGCTCAGTGCATCTCTGCACCAAACAGTGATCAATCATCCCCTTTTTCAGTTCCAACAGCTCAAACACTCCCTCTTGCTTCTGACCCTGCCTCTCTTCAGTTTAGTGAGTTCCCTTTGTGGCCCGCAACCATTGCAGAAGATAGAGCTGCAAGTGCTTCAAAGAGTCACAGTCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTCGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATAGATGTGAGCAAAGCCATCACTGTTCCAACTGAAACTGATGAAGTAACAATTGACTTCCACCAAGCTCAGGATGAAAGCTACACAAAAGTGAATATATTCAAGGAAAACATCATAATCAAAGCTTCTGTTTGCTGTGATGATCGACCAGAAGTGTTCCCTGAGCTCATCCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAGGCTGACATAGCCAGTGTGGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCACAAAGGATAGTGAAGAGAGTAGTGTTTGCCTTAGCACCCTCAAACAATCACTTAAATCAGCTGTGAACAAAATTGCTTCCTTATCTGTGGCAACTAATTGTCCCACCAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTACGGACAATCATAA 942 0.4395 MELSQDLPSSSHSTGLGIRGSLRELFIKLIEYLGIEWEIKSSQSQAQALEWFLIVHMGSYYYSGWPLATNVAQCISAPNSDQSSPFSVPTAQTLPLASDPASLQFSEFPLWPATIAEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAIDVSKAITVPTETDEVTIDFHQAQDESYTKVNIFKENIIIKASVCCDDRPEVFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCTKDSEESSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFLPSHYGQS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00503 313 CDD bHLH_AtAIG1_like 117 195 - -
Spst8g00503 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 174 IPR036638 GO:0046983
Spst8g00503 313 PANTHER TRANSCRIPTION FACTOR BHLH30 114 309 IPR045847 GO:0003700|GO:0006355
Spst8g00503 313 Gene3D - 116 178 IPR036638 GO:0046983
Spst8g00503 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Spst8g00503 313 Pfam Helix-loop-helix DNA-binding domain 125 171 IPR011598 GO:0046983
Spst8g00503 313 SMART finulus 128 177 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00503 Spst-Chr8 4760797 4767153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00503 108 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.972 4.34e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g00503 HLH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00503 - - gmx:100787169 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00503 8 4760797 4767153 Spst8g00503 8 4760797 4767153 ECH
Spst8g00503 8 4760797 4767153 Spst8g00503 8 4760797 4767153 PCT