Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00492 ATGCTTCGTGGTTCTGCTACTGGGATTTGGGACATGTGTAGTGATTCAAAGAGTAAACTTTCTTCCCAAAGCCTCGTGATGGAGAATAATCTTCCGAAGCAGAATCTTGATGGTTTCTACAACTTCTCGGCTTTGCTTGAACTGTCTGCATCCGATGATTTTGAGGATTTTAGGAGAGAAGTGGATGAGAAGGGCTTAGATGTCAACGAGGCTGGCTTTTGGTATGGTAGAAGAATTGGGTCCAAGAAGATGGGATCTGAAACGAGGACCCCCCTCATGATTGCTTCTTTGTTTGGGAGCACTAGGGTTCTCAAGTATATTCTTGAGGCAGGAAGTGTTGATGTGAATAGGGCCTGTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGCTGCTGGAGGCTCTGAATCCTCACCTGAGATTGTCAAGCTCTTGCTAGATGCTGGGGCTGATGCAGAATCCCTTGATGCCAGTGGAAACAAGCCGGTTGATTTGATCGCTCCCGCCTTTGATTCTTCCTCCAAATCTCGGAGGAAGGCCTTGGAGTTGTTCCTCAGGGGTGGTGAAAGAGATGAGCTGATGAGCCAGGAGATGGAGCTACAGATATCCGCCGTTCCTTTCTCATCAAAAGAAGGTACTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCCGTTGATATATCCTTGCCTGATATCAACAACGGTGTGTATGGAACAGACGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTATTCCCATGACTGGACTGAGTGTCCGTTTGTTCATCCAGGGGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTACAGCTGTGTTCCTTGCCCTGAATTTCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCCCATGGTGTTTTTGAGTCATGGCTACACCCTGCCCAGTACAGAACTAGGCTTTGCAAGGATGAGACTGGCTGCACCAGAAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACCGGGTCAGCTATGCCTTCACCAAAATCCTACTCTGCTAGTGGACTAGATATGACAAGCATGAGTCCACTGGCTCTCAGTTCCACATCTTTGCCTATGCCAACTGTTTCAACCCCACCCATGTCTCCCTTGGCAGCAGCTTCATCTCCTAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTTACTCCACCATCCCTGCAGCTCCCTGGTAGCCGACTCAAGGCTGCTTTGAGTGCCAGGGATCTGGAGTTGGAGATGGAACTGCTCGGTCTAGACAGTCCAGTTCGCCAAAAACAGCAACAACAACAACAACAATTGATAGAAGAGATTGCCAGGATCTCCTCCCCATCTTTCCGCAACAAGGATTTCAGTAGGATCAGTGATTTGAATCCAACCAACCTTGATGACCTGTTAGCCTCTGCTGACCCTTCTGTGTTATCACAACTACATGGACTTTCTATGCAGCCTTCAACACCCACACAAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAACTCCAGGTCTGCGGCCTTCGCAAAGCGAAGCCAAAGTTTCATAGATCGTGGAGCTGCAACCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGATTGGAGTTCCCCTACAGGGAAACTGGATTGGGGTGTTAACGGAGACGAGCTGAACAAGCTGAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTAACTGCTTCCCCCATAGCTCAGCCAGCACATGTTGAGCCCGATGTCTCATGGGTTCATTCATTGGTTAAGGATGTTCCTTCTGAGAGGTCTGAGATGTTTGGTGCTGAGAAGCAACAATATGATCTCAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA 2082 0.4885 MLRGSATGIWDMCSDSKSKLSSQSLVMENNLPKQNLDGFYNFSALLELSASDDFEDFRREVDEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTRVLKYILEAGSVDVNRACGSDRATALHCAAAGGSESSPEIVKLLLDAGADAESLDASGNKPVDLIAPAFDSSSKSRRKALELFLRGGERDELMSQEMELQISAVPFSSKEGTEKKEGSDKKEYPVDISLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTSMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLELEMELLGLDSPVRQKQQQQQQQLIEEIARISSPSFRNKDFSRISDLNPTNLDDLLASADPSVLSQLHGLSMQPSTPTQSGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPIAQPAHVEPDVSWVHSLVKDVPSERSEMFGAEKQQYDLSKEMLPPWVEQLYIEQEQMVA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00492 693 Pfam Ankyrin repeats (3 copies) 85 153 IPR002110 GO:0005515
Spst8g00492 693 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Spst8g00492 693 FunFam Zinc finger CCCH domain-containing protein 66 240 308 - -
Spst8g00492 693 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Spst8g00492 693 SMART c3hfinal6 282 308 IPR000571 GO:0046872
Spst8g00492 693 SMART c3hfinal6 317 340 IPR000571 GO:0046872
Spst8g00492 693 PANTHER UNKEMPT FAMILY MEMBER 47 655 IPR045234 -
Spst8g00492 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 307 IPR000571 GO:0046872
Spst8g00492 693 SMART ANK_2a 122 154 IPR002110 GO:0005515
Spst8g00492 693 SMART ANK_2a 87 117 IPR002110 GO:0005515
Spst8g00492 693 Gene3D - 284 345 - -
Spst8g00492 693 Gene3D - 43 184 IPR036770 -
Spst8g00492 693 ProSiteProfiles Zinc finger C3H1-type profile. 282 309 IPR000571 GO:0046872
Spst8g00492 693 SUPERFAMILY Ankyrin repeat 38 176 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00492 Spst-Chr8 4648829 4651246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00492 40 688 C2H2 Transcription Factor Family AT5G12850 40.762 4.40e-150 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst8g00492 Ank_2 2.1e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00492 - - gmx:100783376 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00492 8 4648829 4651246 Spst8g00492 8 4648829 4651246 ECH