Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00480 ATGGCGGGAAAACTGGCAAAAGCAGCTCATGATGCAAAGATGTTGAAGCTTCTGAGAGAGTACAGTCAAGTGCTGGTGATTTCTTCGGACAATGTGGGTTCCAACCAGCTTCAGGGCATAAGGAGGGGACTCCATGCCGATTCAGTGGTGGTGATGGGAAAGAACTCCATGATGAAACGTTCTATCATCTTGGATGCTGAGAAGACTGGCAACAAGTCCTTCCTTAACCTTGTCCCCCTTCTTGTGGGAAATGTGGCATTAATTTTCACCAAAGGTGACTTGAGAGAGGTTAGCGAACAGATTGCCAAGCACAAGGTTGTTCAACCTATTCTAATGTGCCCCAAGTATACGTCATATGACACATATCACAATTGTTCCTATATGCAATCCGGACAGATACCTTTGGGCCTCACGTGTTGTAATCCGCAGTCTTTGCAGGTTTCTGAGCCTTTTCTTGTATGCTCAAAATTCTTGCCACACCAACATTGTTTCTTGATGAGATCAAGACAGTTCTTGATGACGAGTATATGGTCTCCTCTTCTTCTTTTGGCTGGCAACTTGTGA 564 0.4486 MAGKLAKAAHDAKMLKLLREYSQVLVISSDNVGSNQLQGIRRGLHADSVVVMGKNSMMKRSIILDAEKTGNKSFLNLVPLLVGNVALIFTKGDLREVSEQIAKHKVVQPILMCPKYTSYDTYHNCSYMQSGQIPLGLTCCNPQSLQVSEPFLVCSKFLPHQHCFLMRSRQFLMTSIWSPLLLLAGNL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00480 187 SUPERFAMILY Ribosomal protein L10-like 7 104 IPR043141 -
Spst8g00480 187 FunFam 60S acidic ribosomal protein P0 4 135 - -
Spst8g00480 187 Gene3D - 4 125 IPR043141 -
Spst8g00480 187 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 6 138 - -
Spst8g00480 187 Pfam Ribosomal protein L10 7 103 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00480 Spst-Chr8 4528179 4529924 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00480 7 156 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 48.750 1.51e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00480 K02941 - mnt:21409050 155.606