Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00478 ATGGCACCTAAACAAACCAAGGCAGAGAAAAAGATCGCTTACGATGGGAAGCTCTGCCAGCTTCTGGAAGAGTACGGCCAAATCCTTGTGGTGAACGCCGATAACGTGGGATCCAACCAGCTCCAAAACATCCGCAAAGGCCTCCGCGGCGACTCCGTCGTCCTCATGGGGAAAAACACGATGATGAAGCGTTCCGTCAGGATACACGCAGAGAAAACAGGCAACAACGCATTTCTAAACCTAATCCCCCTCCTTGTCGGCAATGTGGGATTGATTTTCACCAAGGGTGACTTGAAGGAGGTCAGTGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGCGTTGGGTTGGTTGCCCCAATTGATGTTGTTGTTCCTCCTGGCAACACTGGTCTTGATCCATCTCAGACCTCTTTCTTCCAGGTTCTGAATATTCCAACAAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTCATTAAGAAGGGAGAGAAGGTTGGATCTTCTGAAGCTGCATTGCTTGCTAAACTTGGCATAAGACCCTTCTCATATGGGCTTGTGGTTCTTTCCGTCTATGATAATGGGTCTGTATTTAGCCCTGAGGTCCTGGATCTTACTGAGGATGACCTCATTGAGAAGTTTGCCGCCGGTGTTTCCATGGTTACTTCTCTTTCGTTGGCTATCTCATTCCCAACACTTGCAGCTGCACCACATATGTTTGTGAATGCCTATAAGAATGTCCTTTCTATTGCTGTTGAGACAGATTATTCTTTCCCTGAGGCAGACAAGGTCAAAGAATATCTGAAGGACCCAAGTAAATTTGCTGTAGCTGCTGTTGCTGCTCCTGCCTCTGCTTCGGGTCCTCCAGCTGCTGCAGCCAAAGAAGAGGAAAAGAAGGAAGAGCCGGCCGAAGAATCTGATGATGACATGGGTTTCAGTCTGTTTGACTAA 963 0.4787 MAPKQTKAEKKIAYDGKLCQLLEEYGQILVVNADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFAAGVSMVTSLSLAISFPTLAAAPHMFVNAYKNVLSIAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPASASGPPAAAAKEEEKKEEPAEESDDDMGFSLFD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00478 320 FunFam 60S acidic ribosomal protein P0 113 186 - -
Spst8g00478 320 CDD Ribosomal_P0_L10e 9 185 - -
Spst8g00478 320 Gene3D - 114 185 IPR043164 -
Spst8g00478 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 302 - -
Spst8g00478 320 Pfam 60s Acidic ribosomal protein 235 319 - -
Spst8g00478 320 Gene3D - 6 209 IPR043141 -
Spst8g00478 320 MobiDBLite consensus disorder prediction 305 320 - -
Spst8g00478 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Spst8g00478 320 PIRSF L10E 1 320 IPR030670 GO:0042254
Spst8g00478 320 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Spst8g00478 320 MobiDBLite consensus disorder prediction 285 320 - -
Spst8g00478 320 Pfam Ribosomal protein L10 8 108 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00478 Spst-Chr8 4512649 4514345 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00478 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 83.699 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00478 K02941 - gmx:547816 555.058