Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00472 ATGAGTAACTATTTGTTCAGGAAAAAGCCCAAAATATTTTATTCGTCACGGTCTCTGCAAAATAGGTATTTGAAGGTTTCTTATGGAGAGCTACATGAAGCAACCAATGGATTTTCTTCGTCCAATTTAGTAGGTGCTGGTAGCTATGGTTCCGTGTACAGAGGATATCTTCTCCATTTTGAACAATCTGTTGCAGTAAAGGTCTTGAATCTTGAAGCTTGTGGGGCGTCAAAGTGTTTCACAGCTGAATGCAAGGCTCTAGAAAAGATCAAGCACCAGAATGTACTTAACATCCTGACTTATTTTTCAGAAAGTTTGTTGCACAGCGACGAAGTGCTCGAATCTAGAAATTTAAATATCAACCTTCAACTTAGGGTAAATATTGCTCTTGATGTTGCTAATGCATTGGATTATCTTCATCATGGTTCTGAGCAAGCTGTAGTCCACTGTGATATTAAACCAAGCAACGTTCTTATTGATGATGACTTTGTTGCCCACTTAGGGGATTTTGGGTTAGCAAGGCTCCTTAATGTGGTCATGGGACATGCGAGTAGAGATCAGGTTAGTTCGTCAGCAATTAAAGGAACCATTGGATATGTTCCCCCAGAGTACGGGGCAGGTGTTCGAGTATCACCACAAGGAGATATTTACAGCTACGGAATTCTTGTTTTGGAGATGCTCACGGGAAAGAAACCTACAGATGACATGTTTGGTGAGGGTCTAACCCTACACAAATTCTGTATGATGGCAATTCCTGAAGGAATCCCTGAAATAGTAGATTCACGTTTGCTTGTACCATATACTAGAGAAGGAACAGGGGTGGTCATGGACACTAACATCAGAGAGTGTTTGGCGTCCTTTGCTAGGATTGGAGTAGCATGTTCTGCAGAATTGCCTGTTCGGCGGTTGGGCATAAAAGATGTGGTAATGGAGTTGAATGCAATCAAACAGAAGCTGTCTTTCTAA 966 0.4141 MSNYLFRKKPKIFYSSRSLQNRYLKVSYGELHEATNGFSSSNLVGAGSYGSVYRGYLLHFEQSVAVKVLNLEACGASKCFTAECKALEKIKHQNVLNILTYFSESLLHSDEVLESRNLNINLQLRVNIALDVANALDYLHHGSEQAVVHCDIKPSNVLIDDDFVAHLGDFGLARLLNVVMGHASRDQVSSSAIKGTIGYVPPEYGAGVRVSPQGDIYSYGILVLEMLTGKKPTDDMFGEGLTLHKFCMMAIPEGIPEIVDSRLLVPYTREGTGVVMDTNIRECLASFARIGVACSAELPVRRLGIKDVVMELNAIKQKLSF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00472 321 Gene3D Transferase(Phosphotransferase) domain 1 109 320 - -
Spst8g00472 321 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 102 321 - -
Spst8g00472 321 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Spst8g00472 321 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 21 317 - -
Spst8g00472 321 Pfam Protein kinase domain 40 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00472 321 ProSiteProfiles Protein kinase domain profile. 38 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00472 321 PIRSF ILK 261 320 - -
Spst8g00472 321 PIRSF ILK 7 242 - -
Spst8g00472 321 SMART serkin_6 38 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00472 321 Gene3D Phosphorylase Kinase; domain 1 3 108 - -
Spst8g00472 321 SUPERFAMILY Protein kinase-like (PK-like) 19 312 IPR011009 -
Spst8g00472 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00472 Spst-Chr8 4484472 4487312 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00472 25 319 Receptor kinase-like Gene Family AT3G47570 45.141 2.30e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Spst8g00472 Pkinase 4.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00472 - - gmx:100776429 491.115