Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00470 ATGGCTGTAACTCAAATAATGTTTCTTCTTAGTGTTGTTTCACTAACCTTGGTGTATATGGCACCGGCTAGAGTTGCTCTAGTCTTGAGTTCAGAGAGTGATAAGCTGGCTTTACTTGCTTTGAAACAGAAGCTCACCAATGGAGTGCCTAATGCTCTTCCATCATGGAACAACTCTTTGCATTTCTGTGAATGGCAGGGTGTTACATGCAGTCACCGCCACATGAGAGTCTCTGTCTTGTACTTGGAAAATCAAAACTGGGGTGGAACTCTCGGACCACCGTTGGGAAATCTAACCTTCCTCAGAAGCCTCATTCTTTCCAACATCAACTTGTATGGTCAAATTCCTGAACAAATTGGTCGGCTAAAGAGGTTGCAGGTTCTTGACTTGAGCCACAACAATGTTCATGGTCAGATTCCTACACATCTTAATAATTGCTCTAAACTTGAGGTAGTTAACTTGTTGTACAATAAACTCACTGGAAAGGTTCCCTCCTGGTTTGGACTTGGATCCATGACACGGCTTTATAAGTTGCTTCTTGGTGCCAATGATCTAGTTGGTACTATCCCACCTTCCTTGGGGAATCTTTCATCCCTCCAAAATATCACACTTGCAAGAAATCATTTGGTGGGAAGTATACCTCATGTTTTGGGTCGGTTATCAAATTTGAAAGAGTTTAATCTTGGTTTAAATAAATTGTCAGGAGTAGTACCTGATTCTCTTTATAACCTTTCCAATATTCAAATTTTTGTTCTCGGGGAAAACCAGTTATTTGGTGTTCTTCCATCAAACATGCAACTTGCTTTTCCACATCTTCGAGCATTCTTGGTTGGAGTCAACAAGTTCAATGGAACTTTCCCATCTTCAATATCCAACATCTCTGGATTGCAAGCGTTTGATATTTCTTCAAATGGTTTTACTGGGCTAATTCCTCCCACTTTGGGAAGCTTAAATAAACTTGAGATTTTTAGCGTTGGTAATAATAGTTTTGGAAGTGGGAAAGCTGGAGATTTGGATTTCCTTTCATCATTAATCAATTGTACTCATTTGCAAACACTTAATTTGGATTTCAACGAATTTGGTGGTGCGTTGCCAGATCTCATTGGCAATTTGTCTACCCACCTTACTTCATTTAGTATGGAGGTTAATCAAATATCTGGAATGATACCTGAAGGAATCGGAAAGCTAATCGGTTTAACTAACTTCGTCATGGTAGATAATTATCTGGAGGGAAACATTCCAGGTTCAATTGGAAAGCTTAAAAATCTAGTAAGATTGGCCCTGCAAGAAAACAAATTGTCTGGTAATATTCCTACTGTAATTGGCAATCTTACTATGTTGTCTGAACTTTATCTGCACACCAATCAATTCGAAGGAAGCATTCCATTAAGCCTCAAATACTGCACTCGCATGCAGTCATTTGGAGTTTCCAGCAACAACTTGATTGGTAATATTCCTAACCAAGCGTTTGGCAATCTAGAAGGTTTGATAAATCTTGACTTATCCGCCAACTCTTTCACTGGTTCCATCCCTTTAGAGTTTGGAAACTTGAAGCACCTTTCCATATTACATCTATACGAAAACAAATTATCTGGTGAAATACCCCCCGAACTTGGCGCTTGTTCTGCGTTAATAGAGCTTGTGTTGGAGAGAAACTTCTTCAGTGGAAGCATACCTTCGTTCTTGGGCTCTTTAGGATCCCTTGAATTCCTAGACCTTTCTGACAACCACTTCTCAGGCACAATCCCTGGAGAATTACAAAAGTTGAGTTATTTGAATACTTTGAACTTGTCTTTTAACCATCTGTATGGTGAGGTTCCTACAGGAGGTGTCTTTAATAATTTCGCAGCTCTTTCACTCATTGGAAATAAAGATCTCTGCGGGGGGATACCTCAATTGAACCTCCCCGCATGCTCTAAGTTACCATCGAAGAAACACAAGTGGTCTTTTAGGAAGAAACTCGTTCTCATCATTGCAGTTGTTGTTGGAGTGGGTTTGGTTACTTTGACACTGTTTATCAGCATCTATTTGTTCAGGAAAAGGCCCAAAACATCATTGGCTTCATGGTCTCCGAAAAATAGGTACCTGAGGGTTTCTTATGGAGAGCTGCATAATGCAACCAATGGATTTTCTTCATCCAATTTGATAGGGTCTGGAAGCTTTGGTTCTGTATATAGAGGATCTCTTCTCTCTTTTAAAAGACCTATTGCCGTGAAGGTATTGAATCTAGAAACAGGTGGGGCATCAAAGAGTTTCACAGCTGAGTGCAAGGCTCTGGGAAAGATCATGCATAGGAATCTTCTCAACATCTTGACTTGTTGCTCAAGCATTGATTATAATGGGAAAGATTTCAAGGCTATAATTTTTGAGTTCATGCCTAATGGCAGTCTAGAAAGTTTGCTGCACAACAACCAAGAGCTGGAGTCTAGAAATTTCAGTCTCAACCTTCAACATAGGATAAATATTGCTCTTGATGTTGCTAATGCGTTGGATTATCTTCATCATGGTTCTGAGCAAGCTGTAGTTCACTGTGATATTAAGCCAAGCAACGTTCTTCTTGATGATGACAATGTTGCCCACTTGGGAGATTTTGGGTTAGCAAAGCTTCTTCATGTAGTCACGGGTCATTCCAGCAGAGATCAGGTTAGTTCCTCTGCAATTAGAGGAACCATTGGGTATGTTCCACCAGAGTATGGAGCAGGTTGCCGAGTATCAACAAAAGGAGATATCTACAGCTACGGAATTCTTGTGCTGGAGATGCTCACGCGAATGAAACCAACAGATGACATGTTTGGAGAGGGTCTAAGCCTACACAAATTTTGCCAAATGGCAATTCCAGAAGGAATTGGTGAGATAGTAGATTCACGTTTGCTTCTGCCAACTACTGAAGATGGAAGAAGGATGAGGGAAAGCAAAATTAGGGAGTGTTTGGTGGCCTTTGCTAGGATTGGAGTAGCATGTTCTGCAGAATTGCCAGTTGAGCGAATGGACATAAAAGATGTGGTGGTGGAGTTGCATAAAATCAAACACAAACTCTATCACTAA 3045 0.4046 MAVTQIMFLLSVVSLTLVYMAPARVALVLSSESDKLALLALKQKLTNGVPNALPSWNNSLHFCEWQGVTCSHRHMRVSVLYLENQNWGGTLGPPLGNLTFLRSLILSNINLYGQIPEQIGRLKRLQVLDLSHNNVHGQIPTHLNNCSKLEVVNLLYNKLTGKVPSWFGLGSMTRLYKLLLGANDLVGTIPPSLGNLSSLQNITLARNHLVGSIPHVLGRLSNLKEFNLGLNKLSGVVPDSLYNLSNIQIFVLGENQLFGVLPSNMQLAFPHLRAFLVGVNKFNGTFPSSISNISGLQAFDISSNGFTGLIPPTLGSLNKLEIFSVGNNSFGSGKAGDLDFLSSLINCTHLQTLNLDFNEFGGALPDLIGNLSTHLTSFSMEVNQISGMIPEGIGKLIGLTNFVMVDNYLEGNIPGSIGKLKNLVRLALQENKLSGNIPTVIGNLTMLSELYLHTNQFEGSIPLSLKYCTRMQSFGVSSNNLIGNIPNQAFGNLEGLINLDLSANSFTGSIPLEFGNLKHLSILHLYENKLSGEIPPELGACSALIELVLERNFFSGSIPSFLGSLGSLEFLDLSDNHFSGTIPGELQKLSYLNTLNLSFNHLYGEVPTGGVFNNFAALSLIGNKDLCGGIPQLNLPACSKLPSKKHKWSFRKKLVLIIAVVVGVGLVTLTLFISIYLFRKRPKTSLASWSPKNRYLRVSYGELHNATNGFSSSNLIGSGSFGSVYRGSLLSFKRPIAVKVLNLETGGASKSFTAECKALGKIMHRNLLNILTCCSSIDYNGKDFKAIIFEFMPNGSLESLLHNNQELESRNFSLNLQHRINIALDVANALDYLHHGSEQAVVHCDIKPSNVLLDDDNVAHLGDFGLAKLLHVVTGHSSRDQVSSSAIRGTIGYVPPEYGAGCRVSTKGDIYSYGILVLEMLTRMKPTDDMFGEGLSLHKFCQMAIPEGIGEIVDSRLLLPTTEDGRRMRESKIRECLVAFARIGVACSAELPVERMDIKDVVVELHKIKHKLYH 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00470 1014 Gene3D Transferase(Phosphotransferase) domain 1 792 1013 - -
Spst8g00470 1014 Gene3D Phosphorylase Kinase; domain 1 691 791 - -
Spst8g00470 1014 FunFam Leucine-rich repeat receptor protein kinase EMS1 169 264 - -
Spst8g00470 1014 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Spst8g00470 1014 PANTHER OS04G0122200 PROTEIN 105 215 - -
Spst8g00470 1014 FunFam Inactive leucine-rich repeat receptor-like protein kinase 346 638 - -
Spst8g00470 1014 SUPERFAMILY Protein kinase-like (PK-like) 685 1005 IPR011009 -
Spst8g00470 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 681 791 - -
Spst8g00470 1014 Gene3D Ribonuclease Inhibitor 33 166 IPR032675 -
Spst8g00470 1014 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Spst8g00470 1014 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Spst8g00470 1014 Pfam Leucine rich repeat 472 530 IPR001611 GO:0005515
Spst8g00470 1014 Pfam Protein kinase domain 712 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00470 1014 SMART serkin_6 710 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00470 1014 SUPERFAMILY L domain-like 31 330 - -
Spst8g00470 1014 ProSiteProfiles Protein kinase domain profile. 710 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00470 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 792 1014 - -
Spst8g00470 1014 SMART LRR_typ_2 122 146 IPR003591 -
Spst8g00470 1014 SMART LRR_typ_2 220 243 IPR003591 -
Spst8g00470 1014 SMART LRR_typ_2 172 196 IPR003591 -
Spst8g00470 1014 SMART LRR_typ_2 565 588 IPR003591 -
Spst8g00470 1014 SMART LRR_typ_2 420 444 IPR003591 -
Spst8g00470 1014 SMART LRR_typ_2 589 614 IPR003591 -
Spst8g00470 1014 SMART LRR_typ_2 517 541 IPR003591 -
Spst8g00470 1014 Coils Coil 797 817 - -
Spst8g00470 1014 Gene3D Ribonuclease Inhibitor 167 336 IPR032675 -
Spst8g00470 1014 Gene3D Ribonuclease Inhibitor 337 647 IPR032675 -
Spst8g00470 1014 FunFam Lrr receptor-like serinethreonine-protein kinase gso2 267 345 - -
Spst8g00470 1014 SUPERFAMILY RNI-like 268 608 - -
Spst8g00470 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Spst8g00470 1014 FunFam Nuclear pore complex protein NUP107 31 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00470 Spst-Chr8 4477828 4481261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00470 29 1013 Receptor kinase-like Gene Family AT3G47570 44.121 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Spst8g00470 Pkinase 3.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00470 - - gmx:100777490 1565.05