Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00459 ATGGACGAGGGCATGTCAGGCTTTTGCATCAGATCAGGAAGTGTCCGTGGTAAAAGTGGGAGCACCACTTCTTCTGCCACTGGCACCAAGTGTGGGCGTTGGAATCCCACCACTGAACAGGTTAAACTTCTAACTGAACTCTTCAGGTCAGGGCTCCGCACCCCAAGCACTGACCAGATTCAAAAGATCTCTACTCAGCTCAGCTTTTATGGTAAGATTGAGAGCAAGAATGTCTTCTATTGGTTTCAGAACCATAAGGCCAGGGAAAGACAGAAGCGCCGCAAGGTCTCTTTTGATGACAAGGATGTCATTCGTAGACAAAACTCCTTCAATACTTCCACACAAAGTCTTGCTGAGATTCAAGTTTCAGAGCCAGATAGGGTGATTGAGACTCTTCAACTCTTTCCCGTAAACTCCTTTGGTGAATCTGAACCAGAGAACCTGAGGTTACATGCAAATGAATGTAGGGACAGTAGTACAATGTTTTCATACGCGGTGGATGAACAAATAGAGAACCCACCATTGGACCTGCGCTTGAGCTTTCTGTAA 549 0.4608 MDEGMSGFCIRSGSVRGKSGSTTSSATGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDVIRRQNSFNTSTQSLAEIQVSEPDRVIETLQLFPVNSFGESEPENLRLHANECRDSSTMFSYAVDEQIENPPLDLRLSFL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00459 182 Gene3D - 30 98 - -
Spst8g00459 182 SUPERFAMILY Homeodomain-like 32 94 IPR009057 -
Spst8g00459 182 FunFam WUSCHEL-related homeobox 11 30 98 - -
Spst8g00459 182 CDD homeodomain 33 93 IPR001356 GO:0003677
Spst8g00459 182 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 18 111 IPR044555 GO:0003700|GO:0099402
Spst8g00459 182 ProSiteProfiles 'Homeobox' domain profile. 27 92 IPR001356 GO:0003677
Spst8g00459 182 SMART HOX_1 29 96 IPR001356 GO:0003677
Spst8g00459 182 Pfam Homeodomain 31 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00459 Spst-Chr8 4327624 4328396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00459 8 182 Wox Gene Family AT3G11260 54.497 6.55e-60 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst8g00459 Homeodomain 6.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00459 - - pvu:PHAVU_008G226100g 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00459 8 4327624 4328396 Spst8g00459 8 4327624 4328396 ECH
Spst8g00459 8 4327624 4328396 Spst8g00459 8 4327624 4328396 PCT