Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00449 ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGGTATGGAATTGGAAACCCTCTACCCCCCCTGTTTTATGCCAAATTCAAATTGGTTTGTGGAAGAGAGCCACAGCACAGAATGGACTAGAGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGCTCGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTGGTTGACAACCACAACTATGATGGATGCAGAAGAAGGCCTGCACCTATCAGAGGTTCTGATCAAGAGAGAAAGAAAGGAGTCCCCTGGACTGAAGAGGAACACAGACGTTTTCTGCTGGGACTTCTGAAGTATGGTAAAGGGGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACCCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGGAGACCTAGCATCCATGATATAACTACTGTTAACCTTACAGAAACTGCTGCATCAGATAAGAACAAGTCTCCGTTATTTAACGTGTCTCCCATGATTACACCTCAACAGAAACTGAATAGCATGTCAAAAGTACAGCTGGACTGGACTAGCCACTACAATGATGGATCACTCATGGTTTTCAACCCAAATTGTGATGACTTGTTTGTGTCGTCTTCATCTGATATCACTTCCATGGCCCTGAAAATGCAAGGGCAGGATCTCTATGACTGTGCTTTACATGAGGCTTATGCCAAGGTAAAAGCTCCAGGTTTCAGCATGGCTCCTAGAGACTTCAATAATGAAGCTGTTTTTGGTATTCATGCACTGTAG 954 0.4361 MIFPRFCTNLKGMELETLYPPCFMPNSNWFVEESHSTEWTREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVLDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVDNHNYDGCRRRPAPIRGSDQERKKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKNKSPLFNVSPMITPQQKLNSMSKVQLDWTSHYNDGSLMVFNPNCDDLFVSSSSDITSMALKMQGQDLYDCALHEAYAKVKAPGFSMAPRDFNNEAVFGIHAL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00449 317 CDD SANT 38 84 IPR001005 -
Spst8g00449 317 FunFam Transcription factor SRM1 31 98 - -
Spst8g00449 317 Gene3D - 31 98 - -
Spst8g00449 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Spst8g00449 317 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Spst8g00449 317 Pfam Myb-like DNA-binding domain 138 182 IPR001005 -
Spst8g00449 317 SUPERFAMILY Homeodomain-like 37 91 IPR009057 -
Spst8g00449 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Spst8g00449 317 Gene3D - 137 188 - -
Spst8g00449 317 FunFam transcription factor MYB1R1 137 188 - -
Spst8g00449 317 SMART sant 35 87 IPR001005 -
Spst8g00449 317 SMART sant 135 185 IPR001005 -
Spst8g00449 317 CDD SANT 138 182 IPR001005 -
Spst8g00449 317 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 33 249 IPR043363 -
Spst8g00449 317 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Spst8g00449 317 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Spst8g00449 317 ProSiteProfiles SANT domain profile. 34 89 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00449 Spst-Chr8 4240225 4241863 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g00449 Myb_DNA-binding 2.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00449 - - ccaj:109813886 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00449 8 4240225 4241863 Spst8g00449 8 4240225 4241863 ECH
Spst1g00697 1 9130809 9132259 Spst8g00449 8 4240225 4241863 ECH
Spst8g00449 8 4240225 4241863 Spst1g00697 1 9130809 9132259 ECH
Spst8g00449 8 4240225 4241863 Spst8g00449 8 4240225 4241863 PCT