Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst8g00436 | ATGTTGGTCACTACTGAGGACAAGTCTCATGTTATTGTTGTTGACATAGACAGTAATGGCTGTTGTCACCGGAGCTCGGCCGCCGGCGAGGGGTATTCCGACGCTGGCGATCGGTCGGATGAAGAGCAAAGGTCCTCCCATGATCCTGCCACTGAGATAGTGGGAGTGTGTGAGAAGGAGAGAGGATCCTCTGTTTCAGAGTGTTCAGTGGAGGTGGATCTGGAGGAGGGTGCAGTCCCTGAAGTTAAGGTGCATTTGGATATTGTGGAGAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGAACTCCCATCGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACATGTGAAATCTGTGGATCAATTGCACGCAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAATGGAATGAGGCAAATGATGCTTCCACGGTACCAACATCTGGAGCAGCACCACCTACAGAAACTCGAAATTTCTGGCAGGGTCACCGTTTTTTGAATTTCCTGCTAGCATGTATGGTCTTTGCCTTTGTCATATCCTGGCTCTTTCACTTTAATGTACCCTCTTGA | 651 | 0.4839 | MLVTTEDKSHVIVVDIDSNGCCHRSSAAGEGYSDAGDRSDEEQRSSHDPATEIVGVCEKERGSSVSECSVEVDLEEGAVPEVKVHLDIVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEANDASTVPTSGAAPPTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst8g00436 | 216 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 85 | 151 | IPR011016 | GO:0008270 | |
Spst8g00436 | 216 | SUPERFAMILY | RING/U-box | 89 | 147 | - | - | |
Spst8g00436 | 216 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 153 | IPR013083 | - | |
Spst8g00436 | 216 | SMART | ringv_2 | 92 | 145 | IPR011016 | GO:0008270 | |
Spst8g00436 | 216 | PANTHER | ZINC FINGER, RING-CH-TYPE | 18 | 215 | - | - | |
Spst8g00436 | 216 | MobiDBLite | consensus disorder prediction | 27 | 51 | - | - | |
Spst8g00436 | 216 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
Spst8g00436 | 216 | Pfam | RING-variant domain | 93 | 144 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst8g00436 | Spst-Chr8 | 4155831 | 4159778 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst8g00436 | 33 | 216 | C3H Transcription Factor Family | AT5G05830 | 62.703 | 7.50e-76 | 226 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst8g00436 | - | - | gmx:100818979 | 383.645 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g00653 | 1 | 8559408 | 8561927 | Spst8g00436 | 8 | 4155831 | 4159778 | ECH | |
Spst8g00436 | 8 | 4155831 | 4159778 | Spst8g00436 | 8 | 4155831 | 4159778 | ECH |