Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00436 ATGTTGGTCACTACTGAGGACAAGTCTCATGTTATTGTTGTTGACATAGACAGTAATGGCTGTTGTCACCGGAGCTCGGCCGCCGGCGAGGGGTATTCCGACGCTGGCGATCGGTCGGATGAAGAGCAAAGGTCCTCCCATGATCCTGCCACTGAGATAGTGGGAGTGTGTGAGAAGGAGAGAGGATCCTCTGTTTCAGAGTGTTCAGTGGAGGTGGATCTGGAGGAGGGTGCAGTCCCTGAAGTTAAGGTGCATTTGGATATTGTGGAGAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGAACTCCCATCGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACATGTGAAATCTGTGGATCAATTGCACGCAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAATGGAATGAGGCAAATGATGCTTCCACGGTACCAACATCTGGAGCAGCACCACCTACAGAAACTCGAAATTTCTGGCAGGGTCACCGTTTTTTGAATTTCCTGCTAGCATGTATGGTCTTTGCCTTTGTCATATCCTGGCTCTTTCACTTTAATGTACCCTCTTGA 651 0.4839 MLVTTEDKSHVIVVDIDSNGCCHRSSAAGEGYSDAGDRSDEEQRSSHDPATEIVGVCEKERGSSVSECSVEVDLEEGAVPEVKVHLDIVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEANDASTVPTSGAAPPTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00436 216 ProSiteProfiles Zinc finger RING-CH-type profile. 85 151 IPR011016 GO:0008270
Spst8g00436 216 SUPERFAMILY RING/U-box 89 147 - -
Spst8g00436 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 153 IPR013083 -
Spst8g00436 216 SMART ringv_2 92 145 IPR011016 GO:0008270
Spst8g00436 216 PANTHER ZINC FINGER, RING-CH-TYPE 18 215 - -
Spst8g00436 216 MobiDBLite consensus disorder prediction 27 51 - -
Spst8g00436 216 MobiDBLite consensus disorder prediction 34 48 - -
Spst8g00436 216 Pfam RING-variant domain 93 144 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00436 Spst-Chr8 4155831 4159778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00436 33 216 C3H Transcription Factor Family AT5G05830 62.703 7.50e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00436 - - gmx:100818979 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00653 1 8559408 8561927 Spst8g00436 8 4155831 4159778 ECH
Spst8g00436 8 4155831 4159778 Spst8g00436 8 4155831 4159778 ECH