Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00414 ATGCCCCTTCTTCCCCATCTCTCTGTCATTTTCATTGCTCCTCCTCCCTTTTCCCTTGCCTCATCTTCTCTCTCTCACTCTCACAAAATTGCCTTTTCCTCCTCATGGCTCCTTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGTATCATCACTGTTTTCCCTCTCTTTCTCTTTCAGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAGCTTTTCAGAGGTGGGTCCAACAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAACCGAGGAAAGCTTAGTTTGGGGTGCTCCATCTAGAGCCTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAGGAGGATCTAGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAACGCCCATCAAGGATATAGTTGGGGAGAAGACTCTGGTGAAGATTACTCAAAGGCACCTCTGGATACCCTTAACTCATCATCACACCCCCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCACCCAAATTGCTTTCGTTGTCACTCCTGTCGTTACCCCATTACTGAACGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAGTTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATTAATGCAGCTGGCTTGATTGAATACAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATCGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTAAATGAAGCTATAGTAGGGGAGAAAAATGGTTTTCTACACTTACCAGAAACAAGGGGTTTATGCCTTTCAGAAGAGCAGACTGTGACCAGTATTCATAGGAGGCCAAGAATTGGAGGCCATCGACTCATAGGGATGAGAACTCAACCACAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGCAACCTTAACCCTGAGGTAGAGGAAGGCATTTGTCAGGTTCTTTCCTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACGTCCACAGCTGCTGCTGCTTCTTCCTCCTCTTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGATTTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAGTATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGAATTTTTCCAGTGTAA 1653 0.4319 MPLLPHLSVIFIAPPPFSLASSSLSHSHKIAFSSSWLLLQMSTIFLIHAYTVSSLFSLSFSFRDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPTEESLVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGEDSGEDYSKAPLDTLNSSSHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTAAAASSSSSKKGAKSHVENKLGDFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGIFPV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00414 550 CDD LIM_DA1 188 240 - -
Spst8g00414 550 Gene3D Cysteine Rich Protein 175 245 - -
Spst8g00414 550 PANTHER PROTEIN DA1-RELATED 2 79 549 IPR045218 -
Spst8g00414 550 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 213 - -
Spst8g00414 550 Pfam Protein DA1 337 544 IPR022087 -
Spst8g00414 550 Pfam LIM domain 188 241 IPR001781 -
Spst8g00414 550 ProSiteProfiles LIM domain profile. 186 246 IPR001781 -
Spst8g00414 550 SMART lim_4 187 239 IPR001781 -
Spst8g00414 550 FunFam Protein DA1-related 2 176 241 - -
Spst8g00414 550 ProSitePatterns LIM zinc-binding domain signature. 188 222 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00414 Spst-Chr8 3973652 3978148 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst8g00414 DA1-like 1.1e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00414 - - gmx:100784976 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00414 8 3973652 3978148 Spst8g00414 8 3973652 3978148 ECH
Spst8g00414 8 3973652 3978148 Spst8g00414 8 3973652 3978148 PCT