Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00397 ATGGCTGGGATTTGTTGTGGCGTTGTTGGGGAGGCCGGCGAGACTCCTTCTCCGACCAAATCTACCTCGCGCCCTTTCGCTCGCCGGAGTTTGGACCAACTACCTTTGAAGTACATAGCCGGTGTGGCAATCCCGCCGCCGGAGAACCGTCGGAAGCGCCAAAAGCTGGACCAGGGCGCTTCTCCGGCGCGGGAGTGTGAAAACGCGGTTCAGAGTTCTGAATCGAAGGGAATCGAGGCTGTCTCGTTTCCGAATTGTACGAAGGTTCCTACTTTAGACTCGACAAAGGCTGTCGTCGAGGAAGAGTGTCCGGGGTATGGGGTAACCTCCGTTTGTGGCAGGAGGAGGGACATGGAAGACGCCGTCTCTGTGCATCCTTCGTTTTGTCTCGAAAATTGTGACCAAGATCAGAAAGGGTTTCACTTCTTCGCTGTTTTTGACGGCCACGGATGCTCACACGTGGCGACTATGTGCAAGGAGAGGTTACACGAAATAGTGAAGGAGGAGATTAACGAAGCGAAAGAGAATTTGGAATGGGAATCGATGATGAAGAATAGTTTCGCTCGAATGGACGAAGAGGTTCTAAGGTGGAGCAAAACCAACGAGACACGCACTTGCAGGTGCGAGCTTCAAACCCCGCGCTGCGACGCCGTTGGCTCCACCGCAGTCGTCGCCGTCGTCACACCGGACAAAATCATCGTTGCAAACTGCGGAGACTCACGCGCCGTGCTCTGCCGGAACAGCGTACCCGTTCCACTCTCCGACGACCACAAGCCGGATCGACCCGACGAGTTACTTCGGATCCAAGACGCCGGAGGGCGCGTGATATATTGGGACGGGCCTAGAGTGCTTGGGGTCTTGGCCATGTCAAGAGCCATAGGGGACAATTATCTGAAGCCGTATGTAATTTCGGAACCGGAGGTAACGGTAACGGAGCGGAGTGACAAGGATGAGTGTTTGATACTAGGGAGTGACGGGCTTTGGGACACGGTGCAAAACGACACCGCTTGTAAGGTGGCGCGGATGTGTCTGAACGCGCAGAAGCCGTCATCACCCTCTTCTCCGGGGAGGGAGTTGGCGGTGGACTGGTCCGACAAGGGGTGCTCCGACGCCTCCATTCTTCTGACAAAGTTGGCGTTGGTGAGGCACAGTTCAGACAACGTGAGCGTGGTGGTGGTTGATTTGAGGAGAGATGAATAA 1200 0.5542 MAGICCGVVGEAGETPSPTKSTSRPFARRSLDQLPLKYIAGVAIPPPENRRKRQKLDQGASPARECENAVQSSESKGIEAVSFPNCTKVPTLDSTKAVVEEECPGYGVTSVCGRRRDMEDAVSVHPSFCLENCDQDQKGFHFFAVFDGHGCSHVATMCKERLHEIVKEEINEAKENLEWESMMKNSFARMDEEVLRWSKTNETRTCRCELQTPRCDAVGSTAVVAVVTPDKIIVANCGDSRAVLCRNSVPVPLSDDHKPDRPDELLRIQDAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSDKDECLILGSDGLWDTVQNDTACKVARMCLNAQKPSSPSSPGRELAVDWSDKGCSDASILLTKLALVRHSSDNVSVVVVDLRRDE 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00397 399 SMART PP2C_4 93 393 IPR001932 -
Spst8g00397 399 MobiDBLite consensus disorder prediction 9 29 - -
Spst8g00397 399 MobiDBLite consensus disorder prediction 42 71 - -
Spst8g00397 399 PANTHER PROTEIN PHOSPHATASE 67 395 IPR015655 GO:0004722|GO:0006470
Spst8g00397 399 Pfam Protein phosphatase 2C 106 360 IPR001932 -
Spst8g00397 399 CDD PP2Cc 105 351 IPR001932 -
Spst8g00397 399 Gene3D - 93 399 IPR036457 -
Spst8g00397 399 ProSiteProfiles PPM-type phosphatase domain profile. 105 395 IPR001932 -
Spst8g00397 399 SUPERFAMILY PP2C-like 97 396 IPR036457 -
Spst8g00397 399 FunFam Protein phosphatase 2C 37 100 399 - -
Spst8g00397 399 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00397 Spst-Chr8 3853746 3855293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00397 89 397 PP2C-type Phosphatase Gene Family AT1G07430 61.791 1.74e-142 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00397 K14497 - gmx:100781388 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00397 8 3853746 3855293 Spst8g00397 8 3853746 3855293 ECH
Spst8g00397 8 3853746 3855293 Spst8g00397 8 3853746 3855293 PCT