Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00393 ATGAAGTCACACTCACACCTTGGTGATGAAGCTCCAATTATTGGAGATGACAAGATGATCAATTGGGAAGAAAGGGCTTTTGCTGAAGACGCAGCTAGGATTCTTGGCGGGAGCATGTGGCCTCCAAGATCTTACTCTTGCACCTTTTGTAAGAGAGAGTTCAGGTCTGCTCAAGCTCTTGGGGGTCACATGAATATCCACAGAAGGGACAGGGCTAGGCTCAAACAAAATCTAAGCCCTCATCACAATGAACCCCTTCATCATCATCATCACAAAATTGATGATTGCATCAAATCCTTATTGAGTAATAATCGTCATTTTTCTGCACCAGAGATCTCCACCCAGATAGATTGCGGTCTTTCTCGTGCTCTTGATTATTCTAGCCAAGCAACTACAATTACAACAACCAGATCACTGTCATGTATATCTACACAAGAAAAATGTGGTCAGCATAAATTTTCACCTTCTTCTTCAATTATCTTGGATCATACGGGGTCTCCTAATTCAGAACAAGAAAGGGAGGTCAAAGCAAAGGAGTACAATTTTAATGGCTTGGGATGTGGTAATTATGTTGAAACACGTTTGTCTGTGGGTCTGACTTCCATGTTTGGCAAAAATTCATCGCCAACCGTTCCTTGTGGGGACAGACCCAACATCAGTTGCAAGAGACTAAAGACTATTCCTCTCTTCCTCGGACCATGTTCAAATGATAAGGGCCTGGCTTTTCAACCTGTGGAAATCTCACTTGGACTTGGTCATGGAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAACAGAAACTTAAGTAG 816 0.4265 MKSHSHLGDEAPIIGDDKMINWEERAFAEDAARILGGSMWPPRSYSCTFCKREFRSAQALGGHMNIHRRDRARLKQNLSPHHNEPLHHHHHKIDDCIKSLLSNNRHFSAPEISTQIDCGLSRALDYSSQATTITTTRSLSCISTQEKCGQHKFSPSSSIILDHTGSPNSEQEREVKAKEYNFNGLGCGNYVETRLSVGLTSMFGKNSSPTVPCGDRPNISCKRLKTIPLFLGPCSNDKGLAFQPVEISLGLGHGMEDLDLELRLGKQQKLK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00393 271 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Spst8g00393 271 Pfam C2H2-type zinc finger 45 69 - -
Spst8g00393 271 Gene3D Classic Zinc Finger 41 103 - -
Spst8g00393 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Spst8g00393 271 PANTHER OS07G0101800 PROTEIN 18 267 - -
Spst8g00393 271 SMART c2h2final6 45 67 IPR013087 -
Spst8g00393 271 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00393 Spst-Chr8 3843074 3843889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00393 17 76 C2H2 Transcription Factor Family AT2G37740 73.333 1.03e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00393 - - gmx:102662367 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00605 1 7850801 7851721 Spst8g00393 8 3843074 3843889 ECH
Spst8g00393 8 3843074 3843889 Spst8g00393 8 3843074 3843889 ECH
Spst1g02205 1 30461290 30462158 Spst8g00393 8 3843074 3843889 PCT