Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00391 ATGGCCAACCGATGGTGGGCTGGGAACGTGGCGGTGAGGCCAAATGAGCCCAATTCGTCGCTTCAGCCGATAGAGCAAGACAACGGCGACAACGCTACTCCGACAAACAGTGGCAACAGTAACACCAACGTCAACGCTGGCGACGACGACGAGAACACCGCCAACATCAACGAAGGGGACGATCAGAACCTCGGAAGCGGGCGGCGGCCGAGGGGAAGGCCGCCGGGGTCGAAGAACAAGCCGAAGCCGCCGGTGGTGATAACGAAGGAGAGCCCCAACGCGCTGCGCAGCCACATCCTCGAAATCAGCGGCGGCAGCGACGTGGCGGAGTGCATTGCCACCTTCGCCACGCGCCGCCACCGAGGCGTGTCCGTGCTCAGCGGCAGCGGCGTTGTCACCAACGTCACGCTGCGACAGCCCGCCGCGCCCGGTGGCGTCATCACGCTGCAGGGGAGGTTCGAAATTCTCTCCCTCTCCGGAGCGTTTCTGCCGGCGCCGTCGCCACCGGAGGCCACCGGACTCACGGTGTACCTCGCTGGCGGGCAGGGGCAGGTAGTCGGCGGCAGCGTGGTGGGGCCTCTGGTCGCTTCGGGACCCGTGATGGTGGTGGCTGCCACCTTCGCTAATGCTACCTATGAGAGGTTGCCCTTGGAAGACGAACAAGGAGAAGAGGACATGCAAGAGGTGAATGAAGGTGGTGGTGTTGGAACACCACCACCTTCTCAGGGCGATCAACAAGCACAAGTTGCAATGCCGGTGTATAATTTGGTGCCTAACAATGGTGATGTGTTCTGGGGTCCTCGCCCTGCTCCACCTTCTAATTATTGA 828 0.6208 MANRWWAGNVAVRPNEPNSSLQPIEQDNGDNATPTNSGNSNTNVNAGDDDENTANINEGDDQNLGSGRRPRGRPPGSKNKPKPPVVITKESPNALRSHILEISGGSDVAECIATFATRRHRGVSVLSGSGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGQGQVVGGSVVGPLVASGPVMVVAATFANATYERLPLEDEQGEEDMQEVNEGGGVGTPPPSQGDQQAQVAMPVYNLVPNNGDVFWGPRPAPPSNY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00391 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 208 IPR005175 -
Spst8g00391 275 FunFam AT-hook motif nuclear-localized protein 95 223 - -
Spst8g00391 275 ProSiteProfiles PPC domain profile profile. 92 230 IPR005175 -
Spst8g00391 275 MobiDBLite consensus disorder prediction 221 249 - -
Spst8g00391 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 220 - -
Spst8g00391 275 MobiDBLite consensus disorder prediction 13 62 - -
Spst8g00391 275 PIRSF ESCAROLA 9 265 IPR014476 GO:0003680
Spst8g00391 275 Gene3D - 95 228 - -
Spst8g00391 275 MobiDBLite consensus disorder prediction 1 92 - -
Spst8g00391 275 CDD DUF296 96 179 IPR005175 -
Spst8g00391 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 266 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00391 Spst-Chr8 3819105 3819932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00391 68 259 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 66.667 1.46e-72 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00391 - - aprc:113874473 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00391 8 3819105 3819932 Spst8g00391 8 3819105 3819932 ECH
Spst8g00391 8 3819105 3819932 Spst8g00391 8 3819105 3819932 PCT