Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00390 ATGACAGGGTTTGGCTCATCATGCGGAGCATGCAAGTTCCTAAGGAGAAAATGCACGACTGATTGTGTATTTGCTCCGTACTTTTCCTACGACCAAGCTTCAACCCATTTTGCAGCAGTGCATAAGATTTATGGTGCTAGTAATGTCTCCAAGCTATTGTCACATCTTCCAATCCAGAATAGAAGAGATGCTGCCATCACCATATCTTATGAAGCCTTGGCTCGCATGCATGATCCTATTTATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGCCAGCTTGCAAGAGGAGATAGATGCTCTTGGAAGCATAATGGCAAATTCCCCAGTTAGTGTTGTCAATTGTAGCACCGTCCAAGCACCAATGAACTCAAACAACGTAATACCGTATAATATTTTGCAGCATGATGCTATAAGGACACAGTATTTTCAAAATAATCTGGCTAACTTTCTTTCACAAGAAGGAAGTGCCACAGTCTACCAAAGTTTCGACTCACAGATGAATGTAGAGCTTCCTAATGCACACGTGGAAGAACCTTCATTTGGTGATTCCAACTCCAACCCTTTAGAACAGTTCCTATCTGGAATTGACCAAGAAGTCTTCGTGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGAGCTAG 657 0.4216 MTGFGSSCGACKFLRRKCTTDCVFAPYFSYDQASTHFAAVHKIYGASNVSKLLSHLPIQNRRDAAITISYEALARMHDPIYGCVAHIYALQQQVASLQEEIDALGSIMANSPVSVVNCSTVQAPMNSNNVIPYNILQHDAIRTQYFQNNLANFLSQEGSATVYQSFDSQMNVELPNAHVEEPSFGDSNSNPLEQFLSGIDQEVFVNHPWFKHNADIKS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00390 218 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Spst8g00390 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 162 - -
Spst8g00390 218 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00390 Spst-Chr8 3808939 3810080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00390 1 145 AS2 family AT5G06080 59.477 1.36e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst8g00390 LOB 7.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00390 K13945 - gmx:100787638 340.117