Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00383 ATGTCTTCCCATTGGTGTTTCCGGTGCAACAAATTCGTCAGAGTATGGAGACAAGAAATGCCTATGTGTCCCGATTGTGACAGTGGATTCGTTGAAGAGATTGACCCTTCCCACCGCTCCATTCACGTCGAAACACGCCGCCGTAGATTCCCTAGGGCGGCGGCCATGTACATGATCGGCCACCGTTCCGGTAACCCAGACCACATTCCCCATTCCTCTCGTCATCATCATTGCAGACCAGTCACAGGAGATCGGTCACCGCTCAACCCGGTCATCATGCTCCGCGGCGAGGGATCAAGTAGCCACCGTGGCTCCAGTTTTGACCTTTTCTACGACGATGGCGCCGGTACCGGTCTCCGACCACTCCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGCTTCGACCGTGTGATGGACCAACTTTCCCACGTTGAGTCTAACTCAGGGTCTGGGAGGCACGACCAGAACCACGCACCGGCGTCGAAAGCCTCCGTGGAGGCCTTGCCTACAATTGAGATAAACGCGTCTCATATGGCGACCGAGTCACACTGTGCGGTTTGCAAGGAGCCTTTTGAGCTTTGCACCAAGGCGAAAGAAATGCCATGCAAACACATATACCATTCAGAATGCATCTTGCCGTGGCTAGCGATTCGGAATTCCTGCCCCGTGTGCCGGCACGAGTTGCCTGTTGAGAACGAAAGTGCGGGGTTGGAGCGTGTCGAGGAGGAGGGAGCGAACAACGTGGGGTTGACGATTTGGCGGTTACCGGGTGGAGGGTTTGCGGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGATGTTAACGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTCAACTTTAACAACGTTGTTATGGGTGAACCGAGGAGGATTTCTTGGTCCGTTTCAGAGTCTCGAGGGAGGAGAAGAGGTGGCACGTTTAGGAGAATGTTTGACAGTTTGTTTAGTTGCATGAGAGGTGGTGGGGTTGGGCCTGGACGTTCTTCTGGTTCTGGTTCTTCGAGAACCGTGACGAGTACTAGTGTTAGGGCTTCACGTCCTAACATAGGTCCTTCTGCATCTACTCGAAGGACTTGGTCAATGGATGTCAACGGTGGAACAAGACCATGGTAA 1143 0.5389 MSSHWCFRCNKFVRVWRQEMPMCPDCDSGFVEEIDPSHRSIHVETRRRRFPRAAAMYMIGHRSGNPDHIPHSSRHHHCRPVTGDRSPLNPVIMLRGEGSSSHRGSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFDRVMDQLSHVESNSGSGRHDQNHAPASKASVEALPTIEINASHMATESHCAVCKEPFELCTKAKEMPCKHIYHSECILPWLAIRNSCPVCRHELPVENESAGLERVEEEGANNVGLTIWRLPGGGFAVGRLGRREGERDVNVPLVYTEVDGGFNFNNVVMGEPRRISWSVSESRGRRRGGTFRRMFDSLFSCMRGGGVGPGRSSGSGSSRTVTSTSVRASRPNIGPSASTRRTWSMDVNGGTRPW 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00383 380 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Spst8g00383 380 MobiDBLite consensus disorder prediction 64 87 - -
Spst8g00383 380 MobiDBLite consensus disorder prediction 337 372 - -
Spst8g00383 380 MobiDBLite consensus disorder prediction 67 82 - -
Spst8g00383 380 SUPERFAMILY RING/U-box 166 231 - -
Spst8g00383 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Spst8g00383 380 MobiDBLite consensus disorder prediction 145 164 - -
Spst8g00383 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 230 - -
Spst8g00383 380 Pfam Ring finger domain 184 226 IPR001841 -
Spst8g00383 380 MobiDBLite consensus disorder prediction 332 380 - -
Spst8g00383 380 Pfam Protein of unknown function (DUF1117) 249 351 IPR010543 -
Spst8g00383 380 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Spst8g00383 380 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Spst8g00383 380 SMART ring_2 185 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00383 Spst-Chr8 3745228 3746370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00383 121 249 C3H Transcription Factor Family AT5G01980 38.760 8.68e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00383 K11982 - gmx:100789228 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00383 8 3745228 3746370 Spst8g00678 8 6215575 6216579 ECH
Spst8g00383 8 3745228 3746370 Spst8g00383 8 3745228 3746370 ECH