Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst8g00383 | ATGTCTTCCCATTGGTGTTTCCGGTGCAACAAATTCGTCAGAGTATGGAGACAAGAAATGCCTATGTGTCCCGATTGTGACAGTGGATTCGTTGAAGAGATTGACCCTTCCCACCGCTCCATTCACGTCGAAACACGCCGCCGTAGATTCCCTAGGGCGGCGGCCATGTACATGATCGGCCACCGTTCCGGTAACCCAGACCACATTCCCCATTCCTCTCGTCATCATCATTGCAGACCAGTCACAGGAGATCGGTCACCGCTCAACCCGGTCATCATGCTCCGCGGCGAGGGATCAAGTAGCCACCGTGGCTCCAGTTTTGACCTTTTCTACGACGATGGCGCCGGTACCGGTCTCCGACCACTCCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGCTTCGACCGTGTGATGGACCAACTTTCCCACGTTGAGTCTAACTCAGGGTCTGGGAGGCACGACCAGAACCACGCACCGGCGTCGAAAGCCTCCGTGGAGGCCTTGCCTACAATTGAGATAAACGCGTCTCATATGGCGACCGAGTCACACTGTGCGGTTTGCAAGGAGCCTTTTGAGCTTTGCACCAAGGCGAAAGAAATGCCATGCAAACACATATACCATTCAGAATGCATCTTGCCGTGGCTAGCGATTCGGAATTCCTGCCCCGTGTGCCGGCACGAGTTGCCTGTTGAGAACGAAAGTGCGGGGTTGGAGCGTGTCGAGGAGGAGGGAGCGAACAACGTGGGGTTGACGATTTGGCGGTTACCGGGTGGAGGGTTTGCGGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGATGTTAACGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTCAACTTTAACAACGTTGTTATGGGTGAACCGAGGAGGATTTCTTGGTCCGTTTCAGAGTCTCGAGGGAGGAGAAGAGGTGGCACGTTTAGGAGAATGTTTGACAGTTTGTTTAGTTGCATGAGAGGTGGTGGGGTTGGGCCTGGACGTTCTTCTGGTTCTGGTTCTTCGAGAACCGTGACGAGTACTAGTGTTAGGGCTTCACGTCCTAACATAGGTCCTTCTGCATCTACTCGAAGGACTTGGTCAATGGATGTCAACGGTGGAACAAGACCATGGTAA | 1143 | 0.5389 | MSSHWCFRCNKFVRVWRQEMPMCPDCDSGFVEEIDPSHRSIHVETRRRRFPRAAAMYMIGHRSGNPDHIPHSSRHHHCRPVTGDRSPLNPVIMLRGEGSSSHRGSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFDRVMDQLSHVESNSGSGRHDQNHAPASKASVEALPTIEINASHMATESHCAVCKEPFELCTKAKEMPCKHIYHSECILPWLAIRNSCPVCRHELPVENESAGLERVEEEGANNVGLTIWRLPGGGFAVGRLGRREGERDVNVPLVYTEVDGGFNFNNVVMGEPRRISWSVSESRGRRRGGTFRRMFDSLFSCMRGGGVGPGRSSGSGSSRTVTSTSVRASRPNIGPSASTRRTWSMDVNGGTRPW | 380 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst8g00383 | 380 | Pfam | zinc-ribbon | 3 | 34 | IPR039525 | GO:0061630 | |
Spst8g00383 | 380 | MobiDBLite | consensus disorder prediction | 64 | 87 | - | - | |
Spst8g00383 | 380 | MobiDBLite | consensus disorder prediction | 337 | 372 | - | - | |
Spst8g00383 | 380 | MobiDBLite | consensus disorder prediction | 67 | 82 | - | - | |
Spst8g00383 | 380 | SUPERFAMILY | RING/U-box | 166 | 231 | - | - | |
Spst8g00383 | 380 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 232 | IPR013083 | - | |
Spst8g00383 | 380 | MobiDBLite | consensus disorder prediction | 145 | 164 | - | - | |
Spst8g00383 | 380 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 121 | 230 | - | - | |
Spst8g00383 | 380 | Pfam | Ring finger domain | 184 | 226 | IPR001841 | - | |
Spst8g00383 | 380 | MobiDBLite | consensus disorder prediction | 332 | 380 | - | - | |
Spst8g00383 | 380 | Pfam | Protein of unknown function (DUF1117) | 249 | 351 | IPR010543 | - | |
Spst8g00383 | 380 | FunFam | E3 ubiquitin-protein ligase RING1-like | 146 | 232 | - | - | |
Spst8g00383 | 380 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 226 | IPR001841 | - | |
Spst8g00383 | 380 | SMART | ring_2 | 185 | 225 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst8g00383 | Spst-Chr8 | 3745228 | 3746370 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst8g00383 | 121 | 249 | C3H Transcription Factor Family | AT5G01980 | 38.760 | 8.68e-23 | 97.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst8g00383 | K11982 | - | gmx:100789228 | 575.474 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst8g00383 | 8 | 3745228 | 3746370 | Spst8g00678 | 8 | 6215575 | 6216579 | ECH | |
Spst8g00383 | 8 | 3745228 | 3746370 | Spst8g00383 | 8 | 3745228 | 3746370 | ECH |