Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00382 ATGGCCTCTTCTAAGTCTTCTCTTTCCCATCCTCTCCATTCTCTCACAATCCCCCTCTTCATTCTCCTCCAAATCCAAACATGTGTCTCTTCATCACAAATACAAAAACCCCTCCTACTGCCTCTAAAAACACAGACACCCTCACGGAAGCTCTCTTTCCAGCATAATGTAACACTAACCGTCTCGCTAACCGTAGGGTCGCCCCCACAGAACGTTTCCATGGTCCTCGACACAGGGAGTGAACTCTCCTGGCTCCACTGCAAAAAACTCCCAAACCTAAACTCAACCTTCAACCCTTTGCTCTCATCCTCTTACACCGCAACTCCATGCAATTCATCCATATGCAAGACACAAACTCGTGACCTTATCCTACCCTCTTCCTGCGACCCCAACAAACTCTGCCACGTCATGGTCTCCTACGCAGACGCCTCCTCCATCGAGGGCACCCTCGCCGCAGAAACCTTCACCATCGGCGGCGAAGCGCAACAGGGAACCTTGTTCGGGTGCATGGACGCCGCCGGGTACACCTCCGACGCGAACGAGGATTCCAAAACAACCGGTCTAATGGGAATGAACCGAGGCTCTCTCTCGCTCGTGACCCAAATGGCGCTCCCCAAATTCTCGTACTGCATCTCCGGGAAGGACGCTTCTGGCTTCCTCCTCCTTGGCGGCGGAGCCGCCGGAGAGCCGTGGCTGGGGCCGCTGAAGTATACACCTTTAGTGACGGCGACAACCTCGTTGCCGTACTTTGACCGCGTGGCGTACACCGTCCAGCTCGAGGGGATTAAAGTTTCGGAGAAACTTCTGCAACTTCCGAAGTCGGTGTTCGTGCCCGACCACACCGGAGCTGGTCAGACGATGGTGGATTCGGGTACCCAGTTCACGTTTCTTCTGGGGTCGGTTTATTCAGCATTGAAAGTTGAGTTCTTGGAGCAAACTAAGGGGATGCTGACCCGAATTGAGGACCCAAACTTTGTGTTTGAGGGGGCAATGGACTTGTGCTACCACGCGCCGGCGAGTTTGACGGCGGTTCCGGCAGTGACGCTGGTATTTGAGGGGGCGGAGATGAGGGTGTCCGGCGAGAGGCTGTTGTACAGGGTGAGGAAGGGGAGTGATTGGGTTTATTGCTTCACTTTTGGGAACTCTGATTTGTTGGGAATTGAGGCGTACGTGATTGGGCATCATCATCAGCAGAACGTGTGGATGGAGTTTGATTTGGTCAATTCTAGGGTGGGTTTCACAGAGACAACGTGTGACCTCGCGAGTCAACGGTTGGGCCTCTCTCCTTAG 1290 0.5403 MASSKSSLSHPLHSLTIPLFILLQIQTCVSSSQIQKPLLLPLKTQTPSRKLSFQHNVTLTVSLTVGSPPQNVSMVLDTGSELSWLHCKKLPNLNSTFNPLLSSSYTATPCNSSICKTQTRDLILPSSCDPNKLCHVMVSYADASSIEGTLAAETFTIGGEAQQGTLFGCMDAAGYTSDANEDSKTTGLMGMNRGSLSLVTQMALPKFSYCISGKDASGFLLLGGGAAGEPWLGPLKYTPLVTATTSLPYFDRVAYTVQLEGIKVSEKLLQLPKSVFVPDHTGAGQTMVDSGTQFTFLLGSVYSALKVEFLEQTKGMLTRIEDPNFVFEGAMDLCYHAPASLTAVPAVTLVFEGAEMRVSGERLLYRVRKGSDWVYCFTFGNSDLLGIEAYVIGHHHQQNVWMEFDLVNSRVGFTETTCDLASQRLGLSP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00382 429 PANTHER ASPARTYL PROTEASE-RELATED 19 420 IPR001461 GO:0004190|GO:0006508
Spst8g00382 429 Pfam Xylanase inhibitor N-terminal 61 224 IPR032861 -
Spst8g00382 429 SUPERFAMILY Acid proteases 60 419 IPR021109 -
Spst8g00382 429 Gene3D Acid Proteases 48 223 IPR021109 -
Spst8g00382 429 Pfam Xylanase inhibitor C-terminal 254 414 IPR032799 -
Spst8g00382 429 Gene3D Acid Proteases 233 423 IPR021109 -
Spst8g00382 429 ProSiteProfiles Peptidase family A1 domain profile. 59 414 IPR033121 -
Spst8g00382 429 FunFam Aspartic proteinase PCS1 50 224 - -
Spst8g00382 429 FunFam Aspartic proteinase PCS1 230 422 - -
Spst8g00382 429 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 74 85 IPR001969 GO:0004190|GO:0006508
Spst8g00382 429 CDD pepsin_A_like_plant 58 418 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00382 Spst-Chr8 3715161 3716450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00382 60 419 Miscellaneous Gene Families AT1G44130 24.934 1.18e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00382 - - gmx:100789759 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00382 8 3715161 3716450 Spst8g00382 8 3715161 3716450 ECH
Spst8g00382 8 3715161 3716450 Spst1g00593 1 7733638 7734615 ECH