Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00367 ATGTCTTTTTGTCTTCTCTATCGAAACCCCAAGCAAACCCCTTCCACCCCCTCCTCTCTGACTCTTATCTCTCGTGTCCCTGTGTTTGTTTGTCTCTCCCACTTTCTGCCTTTGGATCTTCTTCGTCCTCAAGGGAAGGGAATTGAAGCTTTGAAGATCAATGGCCGAAAGATCGAGTTGGAGATCATTCCTGAAGTTGATCTCTACAAGTGTGAACCCTGGGACTTACCAGGGAAATCATTGTTACCGGGGAAGGACCTGGAGTGGTATTTCTTCAGCCCTCGTGATAGAAAATACCCGAATGGATCAAGAACAAACCGTGCAACAAAATCTGGGTATTGGAAGGCGACAGGGAAGGATAGGAAAGTAAATTCAAAGGCTCGGGCTGTGGGGATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGCTCTCGTACAAATTGGGTTATGCATGAATACCGTCTTGATGAGACACAATGCGAAACTGCTTCCAGCTTGCAGTTTCAGGATGCTTATGCTCTCTGCCGTGTGTTCAAGAAGACTACAGTGATCCCTCCAAAAGTTGGGGGACACTACGTTAGCGTTCCCAATGCCAACCAGATTTCTAGCGATCAATCATCAAGCATTGAACTATACTCTGAGGGAAGGGATGAAGATTTGGATAGCCCAAATTATTTCATGTCTACGGATACTTGCTCACCCCAAAACGTTGGAAGTGACACTCCTCTCACTATCAATGGTGTGACGACAAGGGGTCATGAGAAATGGTCACACTTCTCATCACAAGACCCATTATTTAGTCTTCCAACTTCTTCATATCCTAATTTTGGAGCCATAGCATACCCTCCATCCAAGGTGGATATAGCACTTGAGTGTGCAAGGATGCAACATAGATTTGTTATGCCCCCTTTGCAGGTAGATGATTTCCCTGATGTTGGAATATCAGAGCTGAAAATGACACAAGCCTCTAGTTCCATTCAAGGAAGCAGAACTGAAACGGATATTTTGCAGGAATTTCTTTCAGTTGCTCATGCCTCTAAGGAATTAATAAATCAATCCTGCTACTCACAGGAATGGGGTGGCAATGATTATTATGCTCCTTCTGAAGCCGATTTTACCTTCATGGTTGGCACTAATTACAATCATTCAAATGAAATGAGCTCAGTGAGTTATGTTGACAAAGCATGGGAAGATTCAAACACAAGGACAATAGAGATAGAAGACGTTGAAGAAGAGTTTAAGGCGCAGAGGATGGCAGAGAATTTAAGATGGGTTGGAATGTCAAGACAAGATTTAGAAAAGAGAGAAGACCAAAAGATTGTCCCAATAGAGGATATTTCGAGCTTCCAATCTAACAGGGAAGAAAATGAGGTGCAAGAAACTGAGCAATATAGCGACATGAAACACAATGACAGTGAAATTAATGATTTCTCATTGGGCTTCATCAATGATAGTGACCCTAGCAAGAACTATGAAGATGGTAACGTAGATGATTATTCAAGTTCTCCTAGTTTTGAGGTCGTTGAGGAAATAAAAGTAAACCATGGAATGCTTGTGTCGACTCGTCAAGTGGCCGAGACATTCTTTCACCAAATAGTTCCTTCTCAAACCGTCCAAGTTCAACTAAACTCAGTGACGGCAAACAATCATTATGTAGAGAATGCAGAGACAATGCTAATGATTACGGAGAAGCAAGGGTCTTTATTAAGGAAGGTTAAGGCCTATGTGATGGGGAAACTAGTGAGGCCAACAAAGACAATAGCAAGTGCGATTGTAATCGTCTTTGCACTTGTGTTAACGCATTGTGTTTATTTGATGGTAGAAGTGGAAATTTGGAATGAAACATGCTGCAGTAGTAGTGCTACTGTCATAATAAGTTAA 1890 0.4228 MSFCLLYRNPKQTPSTPSSLTLISRVPVFVCLSHFLPLDLLRPQGKGIEALKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSKARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDETQCETASSLQFQDAYALCRVFKKTTVIPPKVGGHYVSVPNANQISSDQSSSIELYSEGRDEDLDSPNYFMSTDTCSPQNVGSDTPLTINGVTTRGHEKWSHFSSQDPLFSLPTSSYPNFGAIAYPPSKVDIALECARMQHRFVMPPLQVDDFPDVGISELKMTQASSSIQGSRTETDILQEFLSVAHASKELINQSCYSQEWGGNDYYAPSEADFTFMVGTNYNHSNEMSSVSYVDKAWEDSNTRTIEIEDVEEEFKAQRMAENLRWVGMSRQDLEKREDQKIVPIEDISSFQSNREENEVQETEQYSDMKHNDSEINDFSLGFINDSDPSKNYEDGNVDDYSSSPSFEVVEEIKVNHGMLVSTRQVAETFFHQIVPSQTVQVQLNSVTANNHYVENAETMLMITEKQGSLLRKVKAYVMGKLVRPTKTIASAIVIVFALVLTHCVYLMVEVEIWNETCCSSSATVIIS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00367 629 ProSiteProfiles NAC domain profile. 23 183 IPR003441 GO:0003677|GO:0006355
Spst8g00367 629 MobiDBLite consensus disorder prediction 458 476 - -
Spst8g00367 629 FunFam Nac domain-containing protein 86 48 186 - -
Spst8g00367 629 Gene3D NAC domain 48 186 IPR036093 GO:0003677|GO:0006355
Spst8g00367 629 Pfam No apical meristem (NAM) protein 51 158 IPR003441 GO:0003677|GO:0006355
Spst8g00367 629 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 59 332 - -
Spst8g00367 629 MobiDBLite consensus disorder prediction 446 482 - -
Spst8g00367 629 SUPERFAMILY NAC domain 52 183 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00367 Spst-Chr8 3550545 3554114 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00367 52 607 NAC Transcription Factor Family AT1G65910 43.816 4.53e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst8g00367 NAM 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00367 - - gmx:100809019 952.97