Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00362 ATGATCGCTATCCCCGTGTTCAACGTACACAAACCTTCTATCATCAAGCCTTTTTTCATTGTGAGTTTTGTTGATTTGAGAACCATCGACCATTTCTTAGTTAATTACATCTGTGTCACTGTTGCTGCTGCTCCTCGAGCCAGCACCTTGAGATTTGGAAAGGTTGGGGTGATCGTTGCAAATTCGAGAATGTTGGATAAAACAAAAGACGAAACAGTGTCTTCGTTTGGTGCCAAGAGAAGTCCATTTGATACGAAGTTGTTGGTTCCAGAGTTGCAGAGGGAGAAGTGTGGGGTTTTGAAGGAGAAGATATTCACCACATGGCGATACAACTTGAAGTCTTTTCATTTGGGTATGGGCCCAAATGCATTTACTCGATCACGGGGTGGTCTTCCAATTAGAGATGGAATATCTTTGAATTCTGGTGTGCATTCTGTTGCAGATATTCCACTTCATGATCAGTTTTCTTGTGGAAATGACTATGCCCTGAAGGTAAGAAAACCATATACAATCACAAAGCAGAGAGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGACGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTGTTAGAGAGTCTAGTGGGAACAGCGCAGCCTTGGAGGAGTCAATTGAAATTCCACCTCCACGACCAAAAAGGAAGCCAACTCATCCTTACCCTCGTAAGCTGGTTGAGATTTCAAAGAAAGAGGTTTCCAACTCAGAACACCCTCTGAGGTCTAATTCTCTTAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAGTCAGTGTTATCTACAGTTATTTCCGAAAACCTTGGTTCCTCCGATTCAGAGACACCTACTGGAAGTTTGTCACCAGTCTCATCCATTAGCGGTGTCCCCACAGACAGATTTGAGCTAGCTGAGCCCAAAGCATCATTTGAGGAAGAAGGGTCTCCACCAAGTTCAGCTCATGATGAGCAACCTCCCGTGAAACTGGAGCTCTTTCACAAAGAAAGTGTTTCTACCAAAGATGATGCAGCAGAAGAATTATCTGGTCGTACTCTGAAACTTTTTGGTATCACTCTACTGGTAACAGATACAAGCAAACCTTCTTCTCTAACAACGGAGCCATGCAAACCAATACCTGCGGCTGCAACGTATCTTATGCAACTTCAAAATGGGTGTTCAGATATTGGAGAAGGTACTGCAAGTATTGTGCCAAGGTGGACTTTTTCCCACAATGCACTATTTGTGCCACTTCATAAGGAGTCAAAAGGGAAACATCTATACTCCAATGTTGGAGATTTTGAACGTAAAGAAGTTCAAAAGGAAGGATCATGGACTGGTTCAAGCACTAGTTCAATTAATGACGGAGACAACACTGAAAAATCAGATGATCAAGCCAAGAGTCATGTGCATTGCTTTAGCAAAAGGGATGGACAATTGGACCTTCTTGATCATTCTTCACCAAGTGAAACATCAACTATATTTGAGCTAAGGGTGAGTCCTAAAACCTGTGGGAAAGGTTTTGTACCATATAAAAGGTGCATGGCAGAGAGAGAAATCCAGTACTCATCAGTATGTGATGAGGAGAGGGAAGAGCAACTTGCTGCAGCAGCAGCGTTCACACAAGCCATTCTACTAACACTTGTCTCCTCTCACTACTCCTCTTCCTCCGACTCCGCTCCATCTGTCCAAGCTTCACCCGAGTTCGCTGAGTGGCGATCCGCACACGCCACCTACTACGCGGCAGCGGATCCCCGCGATGCCGTCGGCGGCGCGTGCGGCTATGGGGACCTCGTCAAGGGCGGCTACGGCATGGCCACTGTGGGCCTCAGCGAGACGCTCTTCGAGCGCGGCCAGATCTGCGGCGCGTGCTTCGAGCTGCGCTGCGTGGACGACAACCGGTGGTGCATCCCCGGCACCTCCATCATCGTCACGGCCACGAACTTCTGCGCCCCCAATTACGGCTTCACGTCCGACGGCGGTGGCCACTGCAACCCTCCCAACAAACACTTCGTTCTCCCCATCGAAGCCTTTGAGAAGATCGCCATTTGGAAAGCCGGCAACATGCCCGTACAGTACCGCAGGATAAAGTGTAGGAAGGAAGGAGGGATTCGATTTACTGTTACTGGTTCTGGAATCTTCATTTCGGTGCTGATCAGCAATGTTGCTGGCCATGGAGACATTGTGGCAGTGAAGGTGAAAGGGTCAAGAACTGGTTGGCTTCCCATGGGTCGGAATTGGGGGCAAATTTGGCATGTAAATGCATTGCTGCAGAATCAACCTCTTTCGTTCGAAGTTACTGCAAGTGATGGGAAAACAGTTACGTCTTACAGTGTTGCTCCCAAGGATTGGACTTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGACTTGA 2469 0.4682 MIAIPVFNVHKPSIIKPFFIVSFVDLRTIDHFLVNYICVTVAAAPRASTLRFGKVGVIVANSRMLDKTKDETVSSFGAKRSPFDTKLLVPELQREKCGVLKEKIFTTWRYNLKSFHLGMGPNAFTRSRGGLPIRDGISLNSGVHSVADIPLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKIVRESSGNSAALEESIEIPPPRPKRKPTHPYPRKLVEISKKEVSNSEHPLRSNSLKSSDFGQENNSPKSVLSTVISENLGSSDSETPTGSLSPVSSISGVPTDRFELAEPKASFEEEGSPPSSAHDEQPPVKLELFHKESVSTKDDAAEELSGRTLKLFGITLLVTDTSKPSSLTTEPCKPIPAAATYLMQLQNGCSDIGEGTASIVPRWTFSHNALFVPLHKESKGKHLYSNVGDFERKEVQKEGSWTGSSTSSINDGDNTEKSDDQAKSHVHCFSKRDGQLDLLDHSSPSETSTIFELRVSPKTCGKGFVPYKRCMAEREIQYSSVCDEEREEQLAAAAAFTQAILLTLVSSHYSSSSDSAPSVQASPEFAEWRSAHATYYAAADPRDAVGGACGYGDLVKGGYGMATVGLSETLFERGQICGACFELRCVDDNRWCIPGTSIIVTATNFCAPNYGFTSDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLPMGRNWGQIWHVNALLQNQPLSFEVTASDGKTVTSYSVAPKDWTFGQTFEGKQFET 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00362 822 MobiDBLite consensus disorder prediction 464 493 - -
Spst8g00362 822 Gene3D - 728 820 IPR036749 -
Spst8g00362 822 Gene3D - 582 724 IPR036908 -
Spst8g00362 822 SUPERFAMILY PHL pollen allergen 725 817 IPR036749 -
Spst8g00362 822 PRINTS Expansin/Lol pI family signature 803 817 IPR007118 GO:0005576
Spst8g00362 822 PRINTS Expansin/Lol pI family signature 711 727 IPR007118 GO:0005576
Spst8g00362 822 PRINTS Expansin/Lol pI family signature 596 611 IPR007118 GO:0005576
Spst8g00362 822 PRINTS Expansin/Lol pI family signature 765 779 IPR007118 GO:0005576
Spst8g00362 822 PRINTS Expansin/Lol pI family signature 614 632 IPR007118 GO:0005576
Spst8g00362 822 PRINTS Expansin/Lol pI family signature 636 654 IPR007118 GO:0005576
Spst8g00362 822 NCBIfam myb-like DNA-binding domain, SHAQKYF class 173 222 IPR006447 GO:0003677
Spst8g00362 822 MobiDBLite consensus disorder prediction 231 352 - -
Spst8g00362 822 CDD DPBB_EXPA_N 596 723 - -
Spst8g00362 822 PANTHER EXPANSIN-A15 568 820 IPR002963 GO:0009664
Spst8g00362 822 SMART sant 174 222 IPR001005 -
Spst8g00362 822 Pfam Myb-like DNA-binding domain 175 218 IPR001005 -
Spst8g00362 822 CDD SANT 177 220 IPR001005 -
Spst8g00362 822 MobiDBLite consensus disorder prediction 240 269 - -
Spst8g00362 822 SUPERFAMILY Barwin-like endoglucanases 596 746 IPR036908 -
Spst8g00362 822 PRINTS Expansin signature 667 677 IPR002963 GO:0009664
Spst8g00362 822 PRINTS Expansin signature 727 739 IPR002963 GO:0009664
Spst8g00362 822 PRINTS Expansin signature 654 665 IPR002963 GO:0009664
Spst8g00362 822 PRINTS Expansin signature 686 703 IPR002963 GO:0009664
Spst8g00362 822 PRINTS Expansin signature 627 641 IPR002963 GO:0009664
Spst8g00362 822 PRINTS Expansin signature 774 795 IPR002963 GO:0009664
Spst8g00362 822 PRINTS Expansin signature 703 716 IPR002963 GO:0009664
Spst8g00362 822 PRINTS Expansin signature 803 819 IPR002963 GO:0009664
Spst8g00362 822 PRINTS Expansin signature 739 760 IPR002963 GO:0009664
Spst8g00362 822 SMART dpbb_1 632 718 IPR007112 -
Spst8g00362 822 Pfam Lytic transglycolase 633 718 IPR009009 -
Spst8g00362 822 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 615 728 IPR007112 -
Spst8g00362 822 Pfam Expansin C-terminal domain 729 806 IPR007117 -
Spst8g00362 822 MobiDBLite consensus disorder prediction 270 321 - -
Spst8g00362 822 SUPERFAMILY Homeodomain-like 169 223 IPR009057 -
Spst8g00362 822 FunFam protein REVEILLE 6 isoform X1 177 225 - -
Spst8g00362 822 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 738 817 IPR007117 -
Spst8g00362 822 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 224 IPR017930 -
Spst8g00362 822 ProSiteProfiles Myb-like domain profile. 170 220 IPR001005 -
Spst8g00362 822 Gene3D - 177 224 - -
Spst8g00362 822 ProSiteProfiles SANT domain profile. 173 224 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00362 Spst-Chr8 3508468 3518611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00362 577 822 Expansin Gene Family AT3G03220 82.927 1.37e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst8g00362 DPBB_1 1.4e-17 CL0199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00362 - - gmx:778060 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00372 8 3613849 3615838 Spst8g00362 8 3508468 3518611 ECH
Spst1g00571 1 7504989 7507833 Spst8g00362 8 3508468 3518611 ECH
Spst8g00362 8 3508468 3518611 Spst8g00362 8 3508468 3518611 ECH
Spst8g00372 8 3613849 3615838 Spst8g00362 8 3508468 3518611 PCT