Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00357 ATGGTTCTCTCGAAAACTGCCTCGCATACGGACGCTTCTGTCCATTCAACCTTCGCCTCTCGCTACGTGCGGACCTCTCTTCCCAGGTTCAAGATGGGAGAGCAATCCATCCCGAAGGAAGCGGCTTATCAGATCATAAATGATGAGCTGATGTTGGATGGAAATCCGAGATTGAACCTAGCGTCCTTTGTGACGACGTGGATGGAGCCTGAATGCGATAAACTTATAATGGCGGCCATCAACAAAAACTACGTCGATATGGATGAATACCCTTTGTGGGACCTTGGATTTGGGGGCCCATATGGAAAAACGAACCGGTGTGTTAACATGATAGCTCACCTTTTCAATGCACCACTGGAAGAGTCAGAACATGCAGTTGGTGTTGGCACGGTTGGCTCATCAGAGGCCATAATGTTGGCTGGGTTGGCATTCAAAAGGAGGTGGCAGAATAAAAGAAAACAAGAAGGAAAGCCTTGTGATAATCCCAACATTGTTACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCGAGGTACTTCGAGGTGGAGTTGAAAGAGGTGAAGCTAAGAGATGGATACTTTGTAATGGATCCTGAAAAGGCAGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCAATCCTTGGTTCCACTTTGAATGGAGAGTTTGAAGATGTCAAACGCTTAAACGATCTCTTAGCAGAAAAGAACAAGGAAACTGGATGGGGCACTCCAATTCACGTGGATGCAGCCAGTGGTGGATTCATTGCACCCTTTCTTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCTCTAGTGAAGAGCATCAATGTCAGTGGACACAAGTATGGTCTGGTCTATGCTGGAATTGGATGGGTCATTTGGAGAACCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCAAAAGGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGATTGGGTTATGAGGGATATAAAATGGTGATGGAAAACTGCAGAGACAACATGGAAGTGCTTAAGGAAGGACTGGAGAAAACAGAAAGGTTTGACATTGTGTCGAAAGAAATTGGTGTCCCATTGGTGGCGTTCACTCTGAAGGACCACAGCCACTTCAATGAGTTCCAAATCTCTGACCTGCTGAGGCGCTATGGATGGATAGTGCCAGCATACACTATGCCCCCAGATGCAGAACATGTCACAGTGCTTCGTGTTGTGGTTAGGGAGGACTTTTCTCGCACCCTTGCGGAGCGTCTTGTCATTGATGTCACCAAAGTGGTGCACGAGCTGGAGATGCTTCCTGCTAGGGTAATCAGCACCAACACCGTAAAGGTTACTAGAGAAGACGGTGGAGAAACTGAGGGCAAAGTGTTGATTGCCAAGAAGAGTGAACTAGAGACACAGAGGGAAATCACTTCAGTTTGGAAGAAGTTTGTGATGCAGAGGAAGAAGATGAATGGTGTTTGTTAG 1533 0.4631 MVLSKTASHTDASVHSTFASRYVRTSLPRFKMGEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPLWDLGFGGPYGKTNRCVNMIAHLFNAPLEESEHAVGVGTVGSSEAIMLAGLAFKRRWQNKRKQEGKPCDNPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYFVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLAEKNKETGWGTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKMVMENCRDNMEVLKEGLEKTERFDIVSKEIGVPLVAFTLKDHSHFNEFQISDLLRRYGWIVPAYTMPPDAEHVTVLRVVVREDFSRTLAERLVIDVTKVVHELEMLPARVISTNTVKVTREDGGETEGKVLIAKKSELETQREITSVWKKFVMQRKKMNGVC 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00357 510 Gene3D - 368 455 - -
Spst8g00357 510 NCBIfam glutamate decarboxylase 16 452 IPR010107 GO:0004351|GO:0006536|GO:0030170
Spst8g00357 510 PANTHER GLUTAMATE DECARBOXYLASE 1 510 IPR010107 GO:0004351|GO:0006536|GO:0030170
Spst8g00357 510 Gene3D - 66 367 IPR015421 GO:0003824
Spst8g00357 510 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 388 IPR002129 GO:0016830|GO:0019752|GO:0030170
Spst8g00357 510 Gene3D - 1 65 - -
Spst8g00357 510 FunFam Glutamate decarboxylase 368 455 - -
Spst8g00357 510 FunFam Glutamate decarboxylase 1 65 - -
Spst8g00357 510 FunFam Glutamate decarboxylase 66 367 - -
Spst8g00357 510 SUPERFAMILY PLP-dependent transferases 14 451 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00357 Spst-Chr8 3427176 3431731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00357 1 510 Calmodulin-binding Proteins AT5G17330 80.196 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00357 K01580 - gmx:100791696 931.398