Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00350 ATGTCCTTCTTGAACAACGGTTCCACCGTGGCGTGTAGGGCAGCCACTGCCACAAGGTTTAATGGGTTTTCTGGCGATGCTTTCAAATCTCACCCATTGCACCAATATGGAGTAGGCTCTTCAGAAGCCTCTTCAGGGTTCATGAGATCAAGGTTTTTGTCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCGAGAATGAGGTGGACAAGCACCCTCCATGCTCGATTTGTCCATGCGGTTGAACTTCTCGGAGGCCATGAAAGAGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTGAAGGATCTAACATTGGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAATCTGCAGCATCTTCAGGCCATTCCGATGGGTCTGGAGAGGATGATTTATCTCCTATAGGCAGCACCGCAGATCGCGGCGGTCTCCGGCAATTCCCCAACAACAGAGGGCGGCAGGAATGGGTGGCGCAACAAGACATGGACTATTCTTCCACCACCACTCTTTGGAGTAACTCTTCAAGTTGTGGAGAGTCGCGACTAAGAACTACTTCTAACGACATAGATGGTCTCAGATCACCTATCCTCCAGTCACAAACAATACCAGGAGCCCAGCAAATTGAGGAATGTGATTCAACCAAACAGAAGAACAACATGGCAGGTTCTAATTTGGAGTGCAAAAACCCAAGCTTGGAATTCACATTAGGGAGACCTCATTGGGATGGCAAAGAACAAGCCTAG 768 0.4805 MSFLNNGSTVACRAATATRFNGFSGDAFKSHPLHQYGVGSSEASSGFMRSRFLSKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKSAASSGHSDGSGEDDLSPIGSTADRGGLRQFPNNRGRQEWVAQQDMDYSSTTTLWSNSSSCGESRLRTTSNDIDGLRSPILQSQTIPGAQQIEECDSTKQKNNMAGSNLECKNPSLEFTLGRPHWDGKEQA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00350 255 Pfam Myb-like DNA-binding domain 66 117 IPR001005 -
Spst8g00350 255 NCBIfam myb-like DNA-binding domain, SHAQKYF class 65 118 IPR006447 GO:0003677
Spst8g00350 255 Gene3D - 64 121 - -
Spst8g00350 255 MobiDBLite consensus disorder prediction 122 160 - -
Spst8g00350 255 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 39 253 IPR044847 GO:0000976|GO:0006355|GO:0010158
Spst8g00350 255 SUPERFAMILY Homeodomain-like 62 118 IPR009057 -
Spst8g00350 255 FunFam Myb family transcription factor 63 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00350 Spst-Chr8 3351912 3356121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00350 46 252 G2-like Transcription Factor Family AT5G16560 56.604 4.00e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst8g00350 Myb_DNA-binding 2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00350 - - gmx:100796325 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00350 8 3351912 3356121 Spst1g02296 1 31649533 31654227 PCT