Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00346 ATGATGAACACTTCTACCACCACCCACTTTCTAAACCCTCTAGCCATGGTCATTTTGTTAACCGTGATGACCTTTTTGGCTAACTCCCAAGACGACGTTTCAGCAATGCTGGCTCTCAAGAACAGCCTCAACCCGCCGGGGTGGTCCGGCCCGGACCCATGCAAATGGGACCACGTGGGGTGCTCCGACGACAAACGGGTCACCCGGATCCAAATCGGGCGCCTCAACCTCCAAGGCACTCTCCCTGCAACCCTTCAGAACTTGACCCAGTTGGAACACTTGGAGCTCCAATACAACAACATCTCGGGTCCTATTCCCTCACTCAACGGCTTGCCCAACCTCCGAGTCTTCATTGCCAGCAACAATCGCTTCTCCGCTGTTCCCGCTGACTTCTTCGCTGGCATGTCGCAGCTCCAGGCGGTGGAGATCGACAACAACCCCTTTGAGCCCTGGGAGGTTCCTCAGACTCTCCGCAACGCTTCTGTGCTTCAGAACTTCTCCGCCAACTCTGCCAACGTCAGAGGCACTCTGCCGGATTTCTTCAGCTCCGACGTGTTTCCTGGTTTGACCCTTCTGCACTTGGCCATCAATAACCTCGAGGGGACGTTGCCTTTAAGCTTTTCTGGCTCCCAGATTCAGTCTTTGTGGTTGAACGGGCAGAAGAGTTTTAACAGGCTCGGTGGCAGTGTTGGTGTTTTGCAGAACATGACTTTCTTGACCGAGGTTTGGTTGCATTCCAATGCTTTCACGGGTCCCTTGCCTGATTTGTCCGGTTTGAAGAGTTTGCAGGTTTTGAATTTGAGGGATAACAGGTTTACTGGTCCTGTTCCGGCTTCGTTGGTGGGTCTGAAGACGCTTGAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCAATGCCGGTGTTTGGCAATGGAGTTGAAGTGGATAATGGTAAGGATTCCAATAGTTTTTGTTTGTCAGGACCTGGTGATTGTGATCCCAGGGTGCAGTTTCTTCTATCTGTTGTTGGGCCTATGGGATATCCTCAAAGGTTTGCTGAGAGTTGGAAGGGGAATGATCCTTGTGCTGATTGGATTGGAATTACTTGTGGAAATGGGAATATAACAGTTGTTAATTTTCAGAAGATGCAACTTAGTGGTGAGATATCCCCTGAGTTTTCAAAGATTAAATCTTTGCAAAGAATAGTACTTGCGGATAACAATCTCACTGGTTCGATTCCAGTAGAGCTTACTACTTTGCCTCTGCTTAGTCAATTGAATGTTGCGAACAATCAGCTTTATGGGAAGGTGCCGAGTTTTAGGAGTAATGTAGTTGTGATTACTAGTGGTAATGTTGATATAGGGAAGGATAAGAGTAGCCAGTCCCCTCAGGGTTCAGTGTCTCCAACGGCTCCCAATTCAAAGGGAGAAAATGGTGGGGGTTCTGGATATGGTGGAAAAAAGTCATCCCATGTGGGAGTGATCGTCTTTTCGGTGATTGGGGCGGTGTTTGTGGTTTCTATGATTGGTTTCTTGATTTTCTGCCTGTTTAGGATGAAGCAAAAGAAGTTGAGCAGGGTCCAGAGCCCAAATGCACTAGTTATTCATCCTAGGCATTCTGGGTCGGATAATGAGAGTGTGAAGATAACGGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTGCCAGTGAAACGCGAACCATACCTGGCAGTGAGGCAGGAGATATTCAAATGGTTGAAGCCGGAAACATGGTCATTTCCATACAAGTTCTGAAGAATGTCACGGAGAACTTCAGTCAGAATAACATATTGGGACAAGGAGGTTTTGGAACGGTTTACAAAGGTGAACTTCATGATGGCACAAGAATTGCAGTGAAAAGAATGGAGTGTGGGGCAATAACTGGGAAGGGTGCAGCAGAATTTAAGTCTGAAATTGCTGTTTTGACAAAGGTTCGCCACCGGCATCTAGTAGCTCTTCTAGGTTACTGCTTGGATGGGAATGAGAAGCTGCTTGTGTACGAGTACATGCCTCAAGGAACACTGAGTAGGCATCTTTTTAACTGGCCAGAAGAAGGACTGGAACCACTGGAGTGGAATAAAAGATTGACAATTGCCTTAGATGTGGCAAGGGGTGTCGAGTACCTCCATGGCTTGGCCCATCAAAGCTTCATACACAGGGACTTAAAACCTTCAAATATTCTCCTTGGAGATGACATGAGGGCAAAGGTTGCAGATTTTGGTCTTGTACGTCTTGCTCCGGAAGGAAAAGCATCTATAGAAACAAGAATTGCAGGAACTTTTGGATATTTGGCACCAGAGTATGCAGTCACTGGCCGTGTGACGACTAAGGTTGACGTGTTCAGCTTTGGGGTAATACTGATGGAGCTGATAACAGGAAGAAAAGCTCTTGATGAGACTCAACCCGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGAATGTCCATAAATAAGGACTTATTCCGCAAGGCCATTGACTCCGCAATCGATCTCAACGAGGAAACTCTTGCCAGTATCCATACTGTAGCAGAGTTAGCTGGCCACTGCTGTGCGAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCTGTTAACGTGCTTTCTTCTCTTGTTGAACTCTGGAAACCTTCTGATCAGAACTCTGAAGATATATATGGCATTGACCTTGACATGTCCTTGCCACAAGCACTTAAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGTCCTCTTCATCTTCGCTTCTACCAAGTTTGGATAACACACAGACGAGTATACCTACGCGCCCATATGGATTTGCTGATTCTTTCACATCAGCAGACGGTAGGTGA 2835 0.4716 MMNTSTTTHFLNPLAMVILLTVMTFLANSQDDVSAMLALKNSLNPPGWSGPDPCKWDHVGCSDDKRVTRIQIGRLNLQGTLPATLQNLTQLEHLELQYNNISGPIPSLNGLPNLRVFIASNNRFSAVPADFFAGMSQLQAVEIDNNPFEPWEVPQTLRNASVLQNFSANSANVRGTLPDFFSSDVFPGLTLLHLAINNLEGTLPLSFSGSQIQSLWLNGQKSFNRLGGSVGVLQNMTFLTEVWLHSNAFTGPLPDLSGLKSLQVLNLRDNRFTGPVPASLVGLKTLEVVNLTNNLFQGPMPVFGNGVEVDNGKDSNSFCLSGPGDCDPRVQFLLSVVGPMGYPQRFAESWKGNDPCADWIGITCGNGNITVVNFQKMQLSGEISPEFSKIKSLQRIVLADNNLTGSIPVELTTLPLLSQLNVANNQLYGKVPSFRSNVVVITSGNVDIGKDKSSQSPQGSVSPTAPNSKGENGGGSGYGGKKSSHVGVIVFSVIGAVFVVSMIGFLIFCLFRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGASETRTIPGSEAGDIQMVEAGNMVISIQVLKNVTENFSQNNILGQGGFGTVYKGELHDGTRIAVKRMECGAITGKGAAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLEPLEWNKRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDETQPEDSMHLVTWFRRMSINKDLFRKAIDSAIDLNEETLASIHTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPSDQNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00346 944 ProSiteProfiles Protein kinase domain profile. 591 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00346 944 FunFam receptor protein kinase TMK1 669 886 - -
Spst8g00346 944 FunFam Receptor-like kinase TMK4 30 324 - -
Spst8g00346 944 CDD STKc_IRAK 597 870 - -
Spst8g00346 944 SUPERFAMILY L domain-like 61 434 - -
Spst8g00346 944 FunFam Leucine-rich repeat receptor-like kinase 328 451 - -
Spst8g00346 944 MobiDBLite consensus disorder prediction 909 944 - -
Spst8g00346 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672|GO:0006468
Spst8g00346 944 ProSiteProfiles Leucine-rich repeat profile. 90 112 IPR001611 GO:0005515
Spst8g00346 944 Pfam Leucine rich repeat N-terminal domain 332 364 IPR013210 -
Spst8g00346 944 Pfam Leucine rich repeat N-terminal domain 30 62 IPR013210 -
Spst8g00346 944 Pfam Protein kinase domain 592 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00346 944 MobiDBLite consensus disorder prediction 449 471 - -
Spst8g00346 944 SUPERFAMILY Protein kinase-like (PK-like) 569 875 IPR011009 -
Spst8g00346 944 SMART serkin_6 591 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00346 944 Gene3D Phosphorylase Kinase; domain 1 553 668 - -
Spst8g00346 944 ProSitePatterns Protein kinases ATP-binding region signature. 597 619 IPR017441 GO:0005524
Spst8g00346 944 PANTHER OSJNBA0070M12.3 PROTEIN 16 944 - -
Spst8g00346 944 Gene3D Ribonuclease Inhibitor 328 452 IPR032675 -
Spst8g00346 944 MobiDBLite consensus disorder prediction 449 478 - -
Spst8g00346 944 FunFam receptor protein kinase TMK1 553 668 - -
Spst8g00346 944 MobiDBLite consensus disorder prediction 909 933 - -
Spst8g00346 944 Gene3D Ribonuclease Inhibitor 28 326 IPR032675 -
Spst8g00346 944 Gene3D Transferase(Phosphotransferase) domain 1 669 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00346 Spst-Chr8 3134407 3138034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00346 475 880 Trihelix Transcription Factor Family AT1G70460 37.352 1.66e-80 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Spst8g00346 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00346 K00924 - gmx:100789646 1625.91