Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00344 ATGTCTTTCGCTCTCATCGAAGCCTGCAAGAAGCGAAAACGGTGGCCAAAGTTTTTCAGGTTTAACTCGTTCGGCGACCCTGGTATCCCAATTGAACCTTTGGGTCCTTTCCGCGATAACGTTCGGGTTTTCCTTCAAGAAGCAGGGGAACCCGAAGATTATAGTGTCTCCGGTAATCCCCTTTGGTGTACCCTTCTCATCCATGATAAGTCCAACGTTATGGCTCCTCTTTACACCGTTGAAGAGCACGTCTACCACTCTTCGCACCCCTTCTGCGATCACTGCCGCTGTGTTGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAGTGGGTGGCATAAGCCCTTAGATGAAGATTCTATAGATAATCAGAGGCATCTGTTGCATGCGGTTATTCATTGCAATGGCTATGGCCATTTGCTCTGTGTAAATGGCATTGAAGGAGGCTCCAAGGTTCTTAGTGGCAGAGAGATCATGGATCTATGGGACAGGGTATGCACCAACCTCCGAGTAAGGAAAGTTGCAGTTGAAGATGTTTCATGCAAGAGGTCCATGGACCTTCGCTTACTTCATGGAGTCGCCTATGGACACTCCTGGTTTGGTAGGTGGGGTTATAGATTTTGCCGTGGAAGCTTTGGAGTGACGGAACTAGAATACAATGAAGCAATGACAACGCTTGGCTCCTTGGAGCTTGACATGATTGCAAATAATTTGAGTAAGACAAAGTACAACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATCTCACTCAGGGATCTTCTAAGGTTTATGCTTACTGTAAAGTCTTCTCGTGCTCCTGCTGCTCCAGCCCCTGCCCCTAAGATAACAGTCACTTATTCTGCTGCTGCTGCTGATTCTACTTGTTCAGCATTAATCTCAAGAAATTCAACCAAACACACACTTCCAACCAGATCAACTTCCATGAAGGAGAAATCTGTGAGGTATAAGAAATTCAGCAATGCAGTGACTAACATGGATAGCAGGTGGCCCACAAGGAGGCTAGAGTTTGCAGCTCAAGTGATTGTGGATGCACTGAAAGAGAACAAGGCTGTGAAACCAGCCTCAGGTGGGATGGCAAGGCAAGATGTGAGAGATGCAGCTAGGCTTCACATTGGTGACACAGGCTTACTTGATTATGTACTTAAATCACTCAACAATGTGATTGTTGGAAATTATGTTGTTCGTCGCATGGTGAATCCATCAACTAGAATTCTAGAGTACACTATTCATGATCTTGGCAAGGGGTACAAAGCCCCTGACGTGGATCCTGAGGTGATGACGTACGTAGATCAACCAGTAGTAGAGTCATCTTGGGTGCCTGGTAATGATGTTTACTGTGATGTATTGTTTTTGTACAAGAATGTGCTATTGGGCTACCCTGATTCAGAAGCAGTGGACTTGGCAGTTCAGACAATTCTAGACAGCAGATACTTTGTGAAAGAGTGGCCAGAGAGGGGTGAAGTAGAGGAGCAGTCATTGACATTCATTTGCCGCCTGCAACCAAATTTTGTGGACAGAAAGTATGAGTTGAAAGGACTACCATGTGGTGAAGTTGTGGTGGTTCCACTGCATGCAACGGTTGGGGACTTGAAGAGGGTTGCCGAGGCTGCTCTTAGGGACACTTACTGCATTGCAGAAAGGCTTATAGTGACAGACATTAAACAACTTATGGGAGTGAGTGATGAGGAAGTGTTGTTTGGACTAATCCAGTCTGGTGTGGAACTTTGTGTGAGGGGAATTGCTATTGATTTGTGCACCAACTTGAAGTATCAGGGTGGATCTGACAACTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGACGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGCAGCATACTCGCTGCTGTGGCATAGATGATTCTGAGACAGTGCCACCACTTTTTGTCTGCACTGGTTGCTGTGATTCACTCGTACCCTCCAGGACTGACTCATCCTTTGGTGCGGATTCTCCTGATTCTTTTCTCATTTCTGCAGACCCTTCTCTTTTGCTAGAATATGAGTATGGATGCTAA 2118 0.4547 MSFALIEACKKRKRWPKFFRFNSFGDPGIPIEPLGPFRDNVRVFLQEAGEPEDYSVSGNPLWCTLLIHDKSNVMAPLYTVEEHVYHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDSGWHKPLDEDSIDNQRHLLHAVIHCNGYGHLLCVNGIEGGSKVLSGREIMDLWDRVCTNLRVRKVAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTELEYNEAMTTLGSLELDMIANNLSKTKYNKEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRAPAAPAPAPKITVTYSAAAADSTCSALISRNSTKHTLPTRSTSMKEKSVRYKKFSNAVTNMDSRWPTRRLEFAAQVIVDALKENKAVKPASGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGKGYKAPDVDPEVMTYVDQPVVESSWVPGNDVYCDVLFLYKNVLLGYPDSEAVDLAVQTILDSRYFVKEWPERGEVEEQSLTFICRLQPNFVDRKYELKGLPCGEVVVVPLHATVGDLKRVAEAALRDTYCIAERLIVTDIKQLMGVSDEEVLFGLIQSGVELCVRGIAIDLCTNLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSRTDSSFGADSPDSFLISADPSLLLEYEYGC 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00344 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 673 IPR013083 -
Spst8g00344 705 ProSitePatterns Zinc finger PHD-type signature. 624 668 IPR019786 -
Spst8g00344 705 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 677 - -
Spst8g00344 705 SMART PHD_3 623 669 IPR001965 -
Spst8g00344 705 CDD PHD_MMD1_like 624 668 - -
Spst8g00344 705 SUPERFAMILY FYVE/PHD zinc finger 613 674 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00344 Spst-Chr8 3120309 3123118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00344 10 674 PHD Transcription Factor Family AT5G22260 33.661 3.57e-119 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00344 K26271 - gmx:100797388 1237.25