Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00343 ATGAGTGCTTCTTCCTCCAGAAAAGTGGACAAGGATGAACAAGAGGCAGAACGTAAAGTCCAGAAGCCAAGGTGGCTTGAGGGTTTTCTGAGAAAAACTTTCTTTGACTCGTGTACAATTCATCCATTTCGTAGGAATGAGTTAAATAAGTACTGCATCAACTGCAATTTGTCAGTTTGCCAATACTGTGTAGCTTCAGGTCCTCATCGCCATCACAAGATACTTAAAATCTATAGACATGTTTACAAGGATGTTGTCTCTCTTACAACCATGGAAAAGTATATTGACAGCTCACAAATTCAGCCTTACAAATGCAACAAACGATTGGTTATTTCTCTGAATCCTCTCCCACATTCTGGTTCAACAGCAAATAACGAGGCATCATGCAATACTTGCAGTAGAAAATTGTCTGAACCTGATTTATATCGCTATTGTTCCATTTCTTGCAAGGTCAGTGCTGCTTTAAGTAACCCTGATGATTCAGCTCCTCCTTTCATTTCCATTCAAACTCCTCGTCTTCCTCCTCCGCAGGAAAAGCAAGGGGAAATCTCTGGACCTCAGAAGCCACAGAAGAGGAAAAGAAAGGGAATACCCCATAGAGCTCCCTTCTTCTGA 615 0.4146 MSASSSRKVDKDEQEAERKVQKPRWLEGFLRKTFFDSCTIHPFRRNELNKYCINCNLSVCQYCVASGPHRHHKILKIYRHVYKDVVSLTTMEKYIDSSQIQPYKCNKRLVISLNPLPHSGSTANNEASCNTCSRKLSEPDLYRYCSISCKVSAALSNPDDSAPPFISIQTPRLPPPQEKQGEISGPQKPQKRKRKGIPHRAPFF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00343 204 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 16 203 - -
Spst8g00343 204 MobiDBLite consensus disorder prediction 190 204 - -
Spst8g00343 204 MobiDBLite consensus disorder prediction 161 204 - -
Spst8g00343 204 Pfam PLATZ transcription factor 79 151 IPR006734 -
Spst8g00343 204 ProSiteProfiles Zinc finger B-box type profile. 38 77 IPR000315 GO:0008270
Spst8g00343 204 Pfam B-box zinc finger 37 77 IPR000315 GO:0008270
Spst8g00343 204 CDD Bbox2 38 77 - -
Spst8g00343 204 SUPERFAMILY B-box zinc-binding domain 37 80 - -
Spst8g00343 204 Gene3D Classic Zinc Finger 32 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00343 Spst-Chr8 3110474 3113491 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Spst8g00343 PLATZ 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00343 - - qsa:O6P43_014262 291.197