Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00342 ATGACGGAGAAGAAGAATGTGAAGGCGGCGACCAAGGAAGAGGGAGAGGAAGGGAAGCAAACGACGTCGTCTTCGACTCCGTTTTCTCCTTCGCTGTCATCGTCTTCGCCTTCGTCCTCGTCTTCGGATGAGAGAGAGTACGAGGTGCAGGACCTGCGGGACCGGTTGAAATCTTCGAGAGGAAGTCGGTTCGATCTGATACAGAATGAGTTCGGACTTAACTCAAGTTGGAGCAAGTTCAGTCGTCAAGCTCTTCTCCATGGACTCCGAGGCTTCTCCAAGGACTTCGTCATCCATCCTGATAACAGTTTGCGGGCGGGGACCCCGAGAGAAGAGCTAAAGAAGGCCCAAGTTTCAGCCAGAGTGTGGTACCGGGCATGGACAAAATTCATTTTGATATGGGCAGTGTATTCATCCTTCTTCACTCCAATGGAGTTTGGATTTTTCCGTGGCCTACCTGAGAATCTCTTCATTCTGGATATCATTGGACAAATAGCTTTTCTCGTGGATATTTTCTTGCAATTCTTTGTTGCTTATAGAGACATTCAGACTTATCGTATGGTCTACAAGCGAACAGCTATAGCTCTGCGGTATGTAAAATCTAACTTCGTGTTGGATATTCTTGCGTGTATGCCCTGGGACGTCATCTTCAAGGTTTGTGGACGAAAAGAGGCGGTGAGGTACCTTTTATGGATCAGATTATACCGGGTGCGGAAAGTCACAGATTTTTTTCATAGATTGGAGAAGGACATACGTATCAATTACATCACTACCCGGATTGTGAAATTGATAGTAGTTGAGCTCTACTGCACCCATACAGCAGCCTGCATTTTCTACTATTTGGCTACTACATTACCGGAATCCCAAGAAGGGTACACATGGATTGGAAGTTTAAAAATGGGTGACTATAGTTATTCACATTTCAGAGAAATTGATATTTGGAAGCGCTACACAACATCTCTCTATTTCGCCATTGTTACTATGGCTACAGTTGGCTATGGAGATATACATGCAGTAAATATGAGGGAGATGATATTCATAATGATATACGTTTCATTTGACATGATTCTTGGTGCCTATTTGATTGGTAACATGACAGCTTTAATAGTCAAGGGATCAAAAACTGAAAGGTTCAGAGACAAGATGACAGATCTTATGAAATATATGAACAGAAATAGGCTTGGAAGGGATATTCGTGAACAAATTAAAGGACATGTGCGCTTACAGTACGAGAGTAGCTACACTGAGGCTGCTGTTATTCAGGATATCCCTATCTCTATTCGAGCTAAGATATCTCAAACATTATACCTGCCATACATTGAGAAGGTTTCTTTATTTAAAGGATGTTCTGCAGAATTCATTAATCAGATTGTTATTAGGATCCATGAGGAGTTCTTTCTTCCAGGGGAAGTTATAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGAGTGTTGGCATGGGACATGCTGGGTGACGAGGAAGTAGGCATAGGTGAAGATGGATGTGAAGAAACTATTTCACTCCTGCAGCCTCACAGTTCATTTGGAGAAATATCTATTCTTTGTAACATTCCTCAGCCATATACTGTGCGCGTTTGTGAACTAAGTAGACTCCTGCGACTTGATAAACAATCATTTACCAATATCTTAGACATATACTTTTATGATGGAAGGAAAGTATTAAACAACCTTCTAGAGGGAAAAGAGTCCTTTCGAGGTAAACAGTTGGAGTCAGACATCACATTTCACATTGGAAAACAAGAAGCCGAACTTGCTTTGAAGGTCAACAGTGCAGCTTTTCATGGGGATTTGCATCAGCTCAAGGGTTTAATTCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCTAGAGGGCATGAAGATATCACACTTTTCCTTCTTAAAGAACGGGTAGACGTCAATATTAAAGATAACTTCGGGAGCACACCATTACTTGAAGCAGTTAAGAATGGAAATGATCGGATTGCTTCTTTACTCGTTAAAGAAGGGGCCTCTATGAAGATTGAAAATGCTGGTAGTTTTTTGTGTACAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGTATGGATCCTAATTTAAAAGATTATGATTACCGAAGCCCTCTTCACATAGCTGCAGCCGAAGGCTTATACTTCATGGCAAAGTTGCTATTGGAAGCGGGAGCTAGTGTTTTCACCAAAGACAGATGGGGAAATACCCCGCTTGATGAAGCCCGGATATGTGGAAATAAGAATCTGATCAAGCTACTGGAAGATGCAAAATCTGCTCAACTGTTGGAATTCCCATATTCCTCCCAAGAATTCACAGATAAAATGCACCCAAAAAAGTGCACAGTGTTCCCTTTCCACCCGTGGGATCCGAAAGATAATAGAAGATATGGGATTGTATTATGGATTCCACACTCCATCGAAGAGCTAATCAAATCAGCGGCAGAACATCTAGAATTTTCTGGCGATTCTTATATTTTATCAGAAGATGGTGGTAAAATTACTGATGTGAACATGATTAAGGATGGTCAGAAACTGTATTTAGTCCAAGAAACACATTAA 2634 0.4138 MTEKKNVKAATKEEGEEGKQTTSSSTPFSPSLSSSSPSSSSSDEREYEVQDLRDRLKSSRGSRFDLIQNEFGLNSSWSKFSRQALLHGLRGFSKDFVIHPDNSLRAGTPREELKKAQVSARVWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIFLQFFVAYRDIQTYRMVYKRTAIALRYVKSNFVLDILACMPWDVIFKVCGRKEAVRYLLWIRLYRVRKVTDFFHRLEKDIRINYITTRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKMGDYSYSHFREIDIWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTERFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEAAVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSAEFINQIVIRIHEEFFLPGEVIMEQGNVVDQLYFVCHGVLAWDMLGDEEVGIGEDGCEETISLLQPHSSFGEISILCNIPQPYTVRVCELSRLLRLDKQSFTNILDIYFYDGRKVLNNLLEGKESFRGKQLESDITFHIGKQEAELALKVNSAAFHGDLHQLKGLIRAGADPNKTDYDGRSPLHLAASRGHEDITLFLLKERVDVNIKDNFGSTPLLEAVKNGNDRIASLLVKEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHIAAAEGLYFMAKLLLEAGASVFTKDRWGNTPLDEARICGNKNLIKLLEDAKSAQLLEFPYSSQEFTDKMHPKKCTVFPFHPWDPKDNRRYGIVLWIPHSIEELIKSAAEHLEFSGDSYILSEDGGKITDVNMIKDGQKLYLVQETH 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00342 877 FunFam Potassium channel SKOR 125 370 - -
Spst8g00342 877 MobiDBLite consensus disorder prediction 1 49 - -
Spst8g00342 877 FunFam Potassium channel KAT2 433 577 - -
Spst8g00342 877 MobiDBLite consensus disorder prediction 20 43 - -
Spst8g00342 877 ProSiteProfiles Ankyrin repeat region circular profile. 725 757 - -
Spst8g00342 877 PRINTS Ankyrin repeat signature 629 644 IPR002110 GO:0005515
Spst8g00342 877 PRINTS Ankyrin repeat signature 741 755 IPR002110 GO:0005515
Spst8g00342 877 SMART ANK_2a 593 624 IPR002110 GO:0005515
Spst8g00342 877 SMART ANK_2a 628 657 IPR002110 GO:0005515
Spst8g00342 877 SMART ANK_2a 725 754 IPR002110 GO:0005515
Spst8g00342 877 SMART ANK_2a 692 721 IPR002110 GO:0005515
Spst8g00342 877 SMART ANK_2a 661 690 IPR002110 GO:0005515
Spst8g00342 877 SMART ANK_2a 758 787 IPR002110 GO:0005515
Spst8g00342 877 SUPERFAMILY Voltage-gated potassium channels 123 370 - -
Spst8g00342 877 MobiDBLite consensus disorder prediction 1 19 - -
Spst8g00342 877 SUPERFAMILY cAMP-binding domain-like 373 569 IPR018490 -
Spst8g00342 877 Pfam Ankyrin repeats (3 copies) 603 691 IPR002110 GO:0005515
Spst8g00342 877 Pfam Ankyrin repeats (3 copies) 698 778 IPR002110 GO:0005515
Spst8g00342 877 Gene3D - 693 787 IPR036770 -
Spst8g00342 877 Pfam Cyclic nucleotide-binding domain 465 556 IPR000595 -
Spst8g00342 877 ProSiteProfiles Ankyrin repeat profile. 692 724 IPR002110 GO:0005515
Spst8g00342 877 CDD CAP_ED 445 566 IPR000595 -
Spst8g00342 877 Pfam KHA, dimerisation domain of potassium ion channel 803 872 IPR021789 -
Spst8g00342 877 ProSiteProfiles Ankyrin repeat region circular profile. 628 660 - -
Spst8g00342 877 Gene3D Helix hairpin bin 372 428 - -
Spst8g00342 877 ProSiteProfiles Ankyrin repeat profile. 661 693 IPR002110 GO:0005515
Spst8g00342 877 Pfam Ion transport protein 125 370 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst8g00342 877 PRINTS EAG/ELK/ERG potassium channel family signature 361 370 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst8g00342 877 PRINTS EAG/ELK/ERG potassium channel family signature 160 170 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst8g00342 877 PRINTS EAG/ELK/ERG potassium channel family signature 269 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst8g00342 877 PRINTS EAG/ELK/ERG potassium channel family signature 317 334 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst8g00342 877 Gene3D - 127 371 - -
Spst8g00342 877 ProSiteProfiles Ankyrin repeat profile. 628 660 IPR002110 GO:0005515
Spst8g00342 877 Gene3D - 585 692 IPR036770 -
Spst8g00342 877 FunFam Gated outwardly-rectifying K+ channel 667 793 - -
Spst8g00342 877 SUPERFAMILY Ankyrin repeat 601 780 IPR036770 -
Spst8g00342 877 Gene3D Jelly Rolls 429 573 IPR014710 -
Spst8g00342 877 ProSiteProfiles Ankyrin repeat profile. 725 757 IPR002110 GO:0005515
Spst8g00342 877 SMART cnmp_10 445 570 IPR000595 -
Spst8g00342 877 ProSiteProfiles Ankyrin repeat region circular profile. 661 692 - -
Spst8g00342 877 PANTHER POTASSIUM CHANNEL AKT1 82 874 IPR045319 GO:0005249|GO:0006813
Spst8g00342 877 ProSiteProfiles cAMP/cGMP binding motif profile. 445 572 IPR000595 -
Spst8g00342 877 ProSiteProfiles KHA domain profile. 804 877 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00342 Spst-Chr8 3090462 3099866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00342 671 778 Ion Channels AT5G37500 32.609 3.52e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00342 K21867 - gmx:100814385 1518.06