Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00321 ATGGGAAGGCAACCATGTTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATCAGCTTCATCCTCACCAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTTGCAGGACTATTAAGGTGTGGGAAGAGTTGCAGGCTCAGGTGGACAAATTACCTTAGACCAGACTTAAAGAGAGGTCTTCTTTCAGACTACGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAACAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAACCACTGGAATACCCACATAAAGAAAAAGCTCAAAAAAATGGGCATTGATCCCATCACACACAAACCACTCCCTAATGCAATTGAACAGACCCAAAATCAACCAAAACAACAACAACTTCACCAACCACCGGAAGAAGAGCAAAACCAACAACCTTTGCAAGTTGACTTTGACACCGAAGTTGACCCGAACAAGGAGCCAGAGATTTCACTGGAGTCATCAACCATAACTGAAGCGAAAGAGAAAGACCAAATGATAGTAACACCCCAATTTGACACAATGGAGCTTAATCCGCTAGTGAATGGGTTCTGTACAGATGAAGTTCCAATAATTGAACCCGATGAGATTCTAATGCCTTGTGCTCCTTCCTCATCACCCACCTCTACATCTTCTTCAAATTCAACCAACTTCCTTGAAGACCTGCAGTTACCTGATTTTGAATGGTCTTGTAATTACAGTGATTGTAGTCTTACTATTAACAATAACAACCATGAAGACAAGAACAACAACTCGTGGGGTGATGATGATGATGATGACCTTATTAGAAAACTTAATTGGCTGATTAATGAAGACGATGATTGTGATGGAACCCAAGTGTTTGATGGTCCTCTCACTCAGTTCTCAGAAATGATCGCGGATTCAGAATCTTGGGCATTTGGCTTGTTTTGA 984 0.4217 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSDYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLPNAIEQTQNQPKQQQLHQPPEEEQNQQPLQVDFDTEVDPNKEPEISLESSTITEAKEKDQMIVTPQFDTMELNPLVNGFCTDEVPIIEPDEILMPCAPSSSPTSTSSSNSTNFLEDLQLPDFEWSCNYSDCSLTINNNNHEDKNNNSWGDDDDDDLIRKLNWLINEDDDCDGTQVFDGPLTQFSEMIADSESWAFGLF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00321 327 Gene3D - 11 67 - -
Spst8g00321 327 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst8g00321 327 CDD SANT 16 61 IPR001005 -
Spst8g00321 327 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst8g00321 327 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst8g00321 327 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 219 - -
Spst8g00321 327 Gene3D - 70 156 - -
Spst8g00321 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst8g00321 327 Pfam Myb-like DNA-binding domain 74 111 IPR001005 -
Spst8g00321 327 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst8g00321 327 FunFam Myb transcription factor 71 133 - -
Spst8g00321 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst8g00321 327 CDD SANT 74 112 IPR001005 -
Spst8g00321 327 FunFam MYB transcription factor 11 67 - -
Spst8g00321 327 SMART sant 66 114 IPR001005 -
Spst8g00321 327 SMART sant 13 63 IPR001005 -
Spst8g00321 327 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00321 Spst-Chr8 2855048 2857131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00321 1 254 MYB Transcription Factor Family AT1G66230 61.240 8.79e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g00321 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00321 K09422 - gmx:100800494 503.442