Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00300 ATGTTCTTGTTGACCTTAACAAACCTTAGGTTCTTTTACGTTTGGATTTCTCTCACTTCCTTAATGGCACACTCTTTGGCATCTCATGGGGTCAATGAGTACCAACAATGTGGGGTTGAGGAGGAAGATGGTTCACAAAGTACTAATGGGCGTAGCAATGATTCAGCTTCAGCCATAACTCATTCTCCTCCTCTATGTGGCATTGGCAATGAGTATGTTCACAAGAGGACACGTAACCAACTTGAAGAAGCAGAATCTCTGATTAATTTCAAAGCCAATGAGTTCAGTAACCTCATGCAAGGTAGTGAGTCTTTTCTTAGCTTTCAGCAGAGTTGGCTGTTTTCTAAAGAGAGTAATTTGCACGAGGGTTATAACCAATGGAACCATGTTAGTCCCAAAAACACCACAGACATGCGCCTAGTCCAAGATTTCAGTTGCTCTGAAACTGCTACTTGTTATAGCTCCATATTCAATGGTGCAAAAGAGAAACAACATGGTGAAAGTTCATCTTCTGGGTGGCTATACTCAGAACCAAATGTCCCTAGTGATAGCCTGAATGAGTCAGCAGCAAAAGAGTTGATCTTGAGAAAGCATTCTTTTATGGGAGAGAACATGCAAGCTGCTAGTGCCAAGAAGCAATGCACAACTGCAAGTAAAGCAACAAAACCAAAGTCAAACCCATCCAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTCCAAGAACTGGTCCCTAACGGCTCCAAGGTTGATTTGGTCACCATGCTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCCCCAGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTTTCATCTCAAAGATGA 945 0.4233 MFLLTLTNLRFFYVWISLTSLMAHSLASHGVNEYQQCGVEEEDGSQSTNGRSNDSASAITHSPPLCGIGNEYVHKRTRNQLEEAESLINFKANEFSNLMQGSESFLSFQQSWLFSKESNLHEGYNQWNHVSPKNTTDMRLVQDFSCSETATCYSSIFNGAKEKQHGESSSSGWLYSEPNVPSDSLNESAAKELILRKHSFMGENMQAASAKKQCTTASKATKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00300 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 286 IPR036638 GO:0046983
Spst8g00300 314 Pfam Helix-loop-helix DNA-binding domain 237 277 IPR011598 GO:0046983
Spst8g00300 314 MobiDBLite consensus disorder prediction 206 233 - -
Spst8g00300 314 FunFam Transcription factor bHLH83 225 284 - -
Spst8g00300 314 SMART finulus 233 282 IPR011598 GO:0046983
Spst8g00300 314 CDD bHLH_AtIND_like 228 290 - -
Spst8g00300 314 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 45 284 IPR045843 GO:0003700|GO:0006355
Spst8g00300 314 Gene3D - 222 284 IPR036638 GO:0046983
Spst8g00300 314 MobiDBLite consensus disorder prediction 39 60 - -
Spst8g00300 314 MobiDBLite consensus disorder prediction 206 238 - -
Spst8g00300 314 Coils Coil 74 94 - -
Spst8g00300 314 MobiDBLite consensus disorder prediction 39 62 - -
Spst8g00300 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00300 Spst-Chr8 2655141 2656574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00300 81 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.131 8.40e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g00300 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00300 - - gmx:106795957 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00300 8 2655141 2656574 Spst8g00300 8 2655141 2656574 ECH
Spst8g00300 8 2655141 2656574 Spst1g02241 1 30888218 30889745 PCT