Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00299 ATGGAGGAGGCTGCTCCGGAGGAGGCGCTGGCCGTACGGCGAGCGTTGGAGATGCTCCAGATAAACGACCCCGTGTTGAGGGTCCAAGCGGCCAGGGAAATCCGCCGCCTCACCAAAACCTCCCACCGCTGCCGCCGCCACCTCCGCCAGGCCATCGCGCCACTAGTCTCCATGCTCCGAGTCAACTCGCCCGAGTTCCACGAACCCGCGCTTCTCGCTCTCCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAAGATTGTGGAAGCTGGTGCATTAGAGCCAATGATCAGTTTCCTCAAGTCACAAAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTCCAACCAACAAACCAATCATTAGTGCTTGTGGCGCCATCCCTCTCCTTGTAAATACTCTTAGGGATGGAAGCTCCCAAGCTAAAGTTGATGCTGTGATGGCTCTGTCCAATTTATCAACACACCCTGATAACCTCAGCATCATTCTCGAAACAAATGCAATGCCTTTTATAGTTAGTCTTCTCAAAACCTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTCTGCTCTGATAGAATCCTTGGTGGGTTATGAGGAGGGCAGAACTGCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGCACTCCCCTGAGTAGGGAACATGCTGTTGGAGCACTACTGACAATGTGCCAAAGTGATAGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACAGTTCAAGGAACCCCTAAATCTCAGCCAAAAGCACGTACCCTTTTGCAGTTACTGAGAGAGTCTCCATATTCAAGACCTGAAGTTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATCTCAGATTGATGGAGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTGCAACAAAGGGCTCTTGTATGTACTCCTAGTGATATGCCTATTACAAGTTGTACTTCTGAAGTTTCTTCAAAATAG 1101 0.4723 MEEAAPEEALAVRRALEMLQINDPVLRVQAAREIRRLTKTSHRCRRHLRQAIAPLVSMLRVNSPEFHEPALLALLNLAVQDEKNKIKIVEAGALEPMISFLKSQNPNLQEYATASLLTLSASPTNKPIISACGAIPLLVNTLRDGSSQAKVDAVMALSNLSTHPDNLSIILETNAMPFIVSLLKTCRKSSKIAEKCSALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPLSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLENIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPITSCTSEVSSK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00299 366 Pfam Armadillo/beta-catenin-like repeat 82 120 IPR000225 GO:0005515
Spst8g00299 366 SUPERFAMILY ARM repeat 14 300 IPR016024 -
Spst8g00299 366 Gene3D - 1 348 IPR011989 -
Spst8g00299 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Spst8g00299 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 218 IPR000225 GO:0005515
Spst8g00299 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Spst8g00299 366 SMART arm_5 122 162 IPR000225 GO:0005515
Spst8g00299 366 SMART arm_5 163 205 IPR000225 GO:0005515
Spst8g00299 366 SMART arm_5 81 121 IPR000225 GO:0005515
Spst8g00299 366 SMART arm_5 40 79 IPR000225 GO:0005515
Spst8g00299 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 92 IPR000225 GO:0005515
Spst8g00299 366 PANTHER U BOX DOMAIN-CONTAINING 12 291 - -
Spst8g00299 366 FunFam U-box domain-containing protein 4 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00299 Spst-Chr8 2639484 2642889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00299 12 289 U-box Gene Family AT2G23140 33.929 1.06e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00299 - - gmx:100793971 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00299 8 2639484 2642889 Spst8g00299 8 2639484 2642889 ECH
Spst8g00299 8 2639484 2642889 Spst1g02240 1 30859671 30863235 PCT