Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00298 ATGATCATCAAAGCTGAAGGCACTCAAGAAGATGATACAATGTCAAGTATGGAAGGGGGTGTTTCCCCCAGCCCTTCCAGAATCTTTGAATTACATCACTGTTGTTCAAACCGTGTTGCAACCCTGACACAGAAGGTGATAGCAGAACTGATTGGCACATATTTTGTGGTATTTGCTGGTTGTGGCTCTGTGGCAGCAAATAAGATCTATGGCTCAATCACATTTCCAGGCATTTGTGTGACATGGGGGCTAATTGTGATGGTTATGATTTACACTGTTACTCATATTTCTGGAGCACACTTCAATCCTGCAGTCACCATCACTTTGGCCATCTTCCGCCGCTTCCCATATAAACAGGTGCCACTATACATTTTTGCACAGTTACTGGGGTCGATACTTGCAAGTGGCACTTTAGCCCTAATGTTGGATGCCACACCTAAAACATTCTTTGGAACGGTACCAGTTGGATCCAATGGCCAGTCTTTAGGCGCTGAAATCATCATCACCTTTCTTTTGATGTTTGTTATATCTGCCGTTACTACAGATGACAGAGCGGTGGGTGACTTTGCAGGAGCCGTAGTTGGGATGACTATAATGTTGAATGTCTTCGTTGCCGGGCCTGTATCAGGAGCTTCCATGAACCCTGCAAGAAGTATTGGTCCTGCACTTATTATACATGTTTACAAAGGGTTATGGATATACATAGTTGGTCCAATTATTGGAGCCATAGCTGGAGCACTTGCCTATAACTTTCTTAGATCCACAGACAAGCCACCTTCAGAGGAAACCACAGGGCCTTCTTCAGAGGCAGTGAATAGGGCTACATAG 828 0.4457 MIIKAEGTQEDDTMSSMEGGVSPSPSRIFELHHCCSNRVATLTQKVIAELIGTYFVVFAGCGSVAANKIYGSITFPGICVTWGLIVMVMIYTVTHISGAHFNPAVTITLAIFRRFPYKQVPLYIFAQLLGSILASGTLALMLDATPKTFFGTVPVGSNGQSLGAEIIITFLLMFVISAVTTDDRAVGDFAGAVVGMTIMLNVFVAGPVSGASMNPARSIGPALIIHVYKGLWIYIVGPIIGAIAGALAYNFLRSTDKPPSEETTGPSSEAVNRAT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00298 275 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Spst8g00298 275 Pfam Major intrinsic protein 41 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 MobiDBLite consensus disorder prediction 256 275 - -
Spst8g00298 275 NCBIfam MIP family channel protein 48 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 PANTHER AQUAPORIN NIP2-1 22 263 IPR034294 -
Spst8g00298 275 SUPERFAMILY Aquaporin-like 40 259 IPR023271 -
Spst8g00298 275 CDD MIP 44 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst8g00298 275 Gene3D Glycerol uptake facilitator protein. 8 264 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00298 Spst-Chr8 2635216 2637136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00298 10 267 Major Intrinsic Protein MIP AT5G37820 64.093 1.24e-117 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00298 K09874 - gmx:100791338 413.69