Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00293 ATGAGAAAACCTTGTTGTGACAAAGCAAACATCAATAAAGGTGCATGGTCCAAGCAAGAAGATCAAAAGCTCACTGACTACATCAGAGTTCATGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGGGCTGCATCGTTGTGGTAAAAGCTGTAGGCTGAGATGGTTGAACTACTTACGACCAGACATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGATTGCCTGGAAGGACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGCAGAAAACTAATAAAGATGGGAATTGATCCAAATAACCATAGACCACACCAAAGCTTTTCTCGTCCTCATGCTTCTTCTGCTGAGGGTGCATCAACATCTGAATCCCTGAACAAAGGCCACAAAGTCCCTGTCTTCAAATCCCGTGCTGCTGCTACTCATCACAGGATTTCCTTCACAAAAGAAGAATCCACAATTATTTCGTCACCCCCTTTGAATCTTGACCTAACAATTGCCTTACCTTCGCCTATGATTGGTTCTTTGGAAGACAAGGCAATACAAAATTCCGAGTCCACCAAGACATTGGTCATGGAAATAGATCTCAACTGTTAG 666 0.4369 MRKPCCDKANINKGAWSKQEDQKLTDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHRPHQSFSRPHASSAEGASTSESLNKGHKVPVFKSRAAATHHRISFTKEESTIISSPPLNLDLTIALPSPMIGSLEDKAIQNSESTKTLVMEIDLNC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00293 221 SMART sant 65 113 IPR001005 -
Spst8g00293 221 SMART sant 12 62 IPR001005 -
Spst8g00293 221 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Spst8g00293 221 CDD SANT 71 111 IPR001005 -
Spst8g00293 221 CDD SANT 15 60 IPR001005 -
Spst8g00293 221 MobiDBLite consensus disorder prediction 122 151 - -
Spst8g00293 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 158 - -
Spst8g00293 221 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Spst8g00293 221 Gene3D - 13 65 - -
Spst8g00293 221 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Spst8g00293 221 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Spst8g00293 221 Gene3D - 68 138 - -
Spst8g00293 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Spst8g00293 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Spst8g00293 221 MobiDBLite consensus disorder prediction 125 150 - -
Spst8g00293 221 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Spst8g00293 221 FunFam Transcription repressor MYB4 68 134 - -
Spst8g00293 221 FunFam Transcription factor RAX3 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00293 Spst-Chr8 2616730 2617806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00293 2 192 MYB Transcription Factor Family AT4G38620 56.604 4.34e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g00293 Myb_DNA-binding 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00293 K09422 - gmx:100306391 364.77