Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00285 ATGCGGCGGAGCAGTCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCCGAGGAGGTGGGTCTGGTAGGAGGGGATTCGGTGGAGGCAGGCGCAGGGACAACAACAATGGAAGCCTCTTGGTTCGGAACATTCCTCTCGATTGCAGATCCGAGGAACTTCGTGTTCCTTTCGAGCGATTCGGACCTGTTCGCGATGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCGGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTTGTTGTGGCTGAAGAGACGAGAAAAAGACCAGAGGAGATGCGCCACAGGACTAGAACCAGAGGACCAACAGGCTATGGAGGGCGAAGGTCTTCTCATTACGGGCGTTCTCGATCTCGCTCAATAACTAGATCACGCTCACCACCTTATCACTCTGGATCTAGAAATCGATATCGCTCAAGGTCCTATTCTCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAACCAGAGCATCCTAGATCACCAAGAGGTCCTCCCAGGGAGCGAGATGGTGATCAGAAGCGTAGATCATTTTCTCCTGCATATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAGGCTGATCGAGGCCAGTGGAAGTCATCGAGATCACCCCTTGGATCTAGATCAAGATCTGCTGAACTGTCACCAAGGCGTGGAAGATGA 804 0.5037 MRRSSPAYYSPPRRGYGGRGGGSGRRGFGGGRRRDNNNGSLLVRNIPLDCRSEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRTRGPTGYGGRRSSHYGRSRSRSITRSRSPPYHSGSRNRYRSRSYSPAPRRQSDYSVSPRRQPEHPRSPRGPPRERDGDQKRRSFSPAYGNGIEQNQSNGYAEKSMYKSEADRGQWKSSRSPLGSRSRSAELSPRRGR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00285 267 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 32 173 - -
Spst8g00285 267 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 34 249 - -
Spst8g00285 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Spst8g00285 267 MobiDBLite consensus disorder prediction 186 212 - -
Spst8g00285 267 MobiDBLite consensus disorder prediction 117 131 - -
Spst8g00285 267 MobiDBLite consensus disorder prediction 152 185 - -
Spst8g00285 267 Gene3D - 30 151 IPR012677 -
Spst8g00285 267 SMART rrm1_1 40 113 IPR000504 GO:0003723
Spst8g00285 267 MobiDBLite consensus disorder prediction 218 233 - -
Spst8g00285 267 MobiDBLite consensus disorder prediction 117 267 - -
Spst8g00285 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Spst8g00285 267 SUPERFAMILY RNA-binding domain, RBD 35 146 IPR035979 GO:0003676
Spst8g00285 267 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00285 Spst-Chr8 2525330 2528397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00285 7 101 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 7.69e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00285 K12900 - gmx:100804294 394.43