Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00283 ATGGAGCAGGAACAACAAAACCTTGAAAGCTTCTTAACATGGGCAGCACTACTTGGAATATCAGACTCAACAACACGCGCCGACCAACCTCAACACTCTCTTTCCTCATGTTTGGGTTCTTCTTTATGTGTCTCTCATTTTCCTCACTCTGGCGGAAGAGGTTTGGGTGCTGTGAGAGACCTTAGAAGGGGGGAAATTGTTCTCAGGGTTCCAAAATATGCTTTGATGACAAGAGAGAGTGTTATGGAAGATAAAAAACTCTGTTTTGCCGTCAATAGACACTCTTGTCTCTCCTCAGTTCAGATATTGATCGTTTGCTTGTTGTATGAAATGAGTAAATGGAAGACTTCAAGGTGGCATCCTTACCTCATGCATTTGCCACACACTTATGACATTCTAGCCATGTTTGGGGAATTTGAGAAGCGTGCTCTGCAAGTGGATGAGGCGATGTGGGTCACTGAAAAAGCTATTCTGAAGGCCAAATCAGAGTGGAGAGATGCTCATGCTTTGATGGAAGATCTCATGTTTAGGCCCCAGTTTTTAACATTTAAGGCTTGGGTTTGGGCTTCTGCAACGATATCTTCTCGAACTTTGCATATACCGTGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGTCATCTGGCATTGAGCATTTAGATTATTTGCTATCAAACTCTTCCATTCACGATACAATCTTATTAAATGGAGACAAGAATATAATGGTAGATGCAGAACAGCTTGATTCTCATTCCCAGAGATTAACTGATGGTGGGTTTGAGGAAGATGTTAATGCATATTGCTTTTATGCTAGGGCACATTACAAGAAAGGAGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGGTTTCTCCTACAAGAAAATCCAAATGACAAAGTTTTTATCCCTTTGGAAGCTGCTGTATATTCTTCCACTTCATGGTCTAAGGACTCACTCTATATCCATCATAATGGGAAGCCTTCATTTGCACTACTTGCTGCATTGCGATTGTGGGCAACCCCACAAAACAAGAGGAGGTCTGTTGGACATCTTGTGTATTCTGGTTCTCAATTGTCTGCAGACAACGAAATTTTCATCATAAAATGGCTGTCCAAAACTTGTATTGCTGTGTTAAAGAATCTGCCAACATCTATTGAGGAAGACACCTTACTTCTGAATGCAATGGATAATAGCCAAGATTTTTTCACTTTCGTGGATATCACAAAACTTTTGTCTTCCAGGGATGAGATGTATACCTTCTTAGAAGCACATAATATGAAGGATACAGATAGTTTCACTGATATAATTTTATCTAGAAAAGCAAGAAGGTCCATGGACAGGTGGAAATTAGCTGTCCAATGGAGGCTCAAGTATAAAAAAGTCCTTTTTAATTGTATCTCTTATTGCAATGATATACTAGATTCTTTCATGAAATAA 1494 0.3989 MEQEQQNLESFLTWAALLGISDSTTRADQPQHSLSSCLGSSLCVSHFPHSGGRGLGAVRDLRRGEIVLRVPKYALMTRESVMEDKKLCFAVNRHSCLSSVQILIVCLLYEMSKWKTSRWHPYLMHLPHTYDILAMFGEFEKRALQVDEAMWVTEKAILKAKSEWRDAHALMEDLMFRPQFLTFKAWVWASATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEESSGIEHLDYLLSNSSIHDTILLNGDKNIMVDAEQLDSHSQRLTDGGFEEDVNAYCFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLEAAVYSSTSWSKDSLYIHHNGKPSFALLAALRLWATPQNKRRSVGHLVYSGSQLSADNEIFIIKWLSKTCIAVLKNLPTSIEEDTLLLNAMDNSQDFFTFVDITKLLSSRDEMYTFLEAHNMKDTDSFTDIILSRKARRSMDRWKLAVQWRLKYKKVLFNCISYCNDILDSFMK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00283 497 CDD SET_LSMT 51 310 - -
Spst8g00283 497 FunFam Protein SET DOMAIN GROUP 40 8 310 - -
Spst8g00283 497 Pfam SET domain 52 296 IPR001214 GO:0005515
Spst8g00283 497 FunFam Protein SET DOMAIN GROUP 40 314 429 - -
Spst8g00283 497 Pfam Rubisco LSMT substrate-binding 345 481 IPR015353 -
Spst8g00283 497 SUPERFAMILY SET domain 40 314 IPR046341 -
Spst8g00283 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 431 - -
Spst8g00283 497 Gene3D set domain protein methyltransferase, domain 1 4 308 - -
Spst8g00283 497 ProSiteProfiles SET domain profile. 40 296 IPR001214 GO:0005515
Spst8g00283 497 Gene3D - 309 496 IPR036464 -
Spst8g00283 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 306 485 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00283 Spst-Chr8 2505521 2514193 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst8g00283 SET 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00283 - - gmx:100787452 901.353