Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00263 ATGCTTGCTGCTGCTGCTTCAGCTTCTCGACACCTTCTTCAACTCGATGGCAGCATCGGTGCTTGCAGTGGCAGTGGCAATCGAGTTCGCTCTATTTTAACTGTTTCTGCCATCGCCACAATTTACCCAAATCGCACCAAGACCTGTCATAGTTATGGTTATGGAATCAGTTTCAATGCCCCAAAACACAGAACGTGCCCAAGTTTGTTGTTTGCTGTAAAGGGGTTCCTCTCTGATTCATCAAATTCCAATCCTCCACATGGCAGAGTACCTAGACCATACTTACCACACCCTAGTTCAACTGTGGATGGGCGAGCATTGTTCTCATCTTCAACCAAAGATGAGGGAAGCCAAAGCCAAAAGACTGGTTCTTCCACCATTGCTAAACCACGACCATCAGTTCCTGGTGGGGAAGTTGCTGATGTGAAGATCCTTGGCACACTTGCCAGTTACCTTTGGATGAAAGATAATCTTGAATTTCGGGTTCGGGTTATTGCTGCATTGGGTTTACTTATTGGGGCTAAGGTTTTGAATGTTCAGGTCCCGTTCTTGTTCAAGCTTGCAGTTGATTCGTTGACGACTGCCACGGGAAGTGCTGCTACTCTTGCTTCGAGTTCAAGTGGGCTGGCTCTTTTTGCAACCCCAGTGGCAGTGTTGGTTGGATATGGGATTGCGCGTTCAGGAGCTTCCGCTTTCAATGAACTGCGGACTGCTGTATTTTCCAAGGTTGCACTGCGGACAATTCGTTTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGCCGAGAAACTGGTGCATTAAGTAGAATAATTGACCGTGGTAGTCGTGGAATAAATTTCATTCTCTCTTCTATGGTGTTCAATGTAGTACCCACCATATTAGAGATATCTTTGGTAGCAGGTATACTGGCCTATAAATTTGGAGCTCCCTTTGCGCTGATTACTTCCTTATCAGTTGCTGCTTATGTTATTTTTACACTGTCTATCACACAGTGGAGGACTAAGTTCAGGAGAGCCATGAATAAGGCGGATAATGATGCCAGTACGAGGGTTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTTAATAATGAAGTGTATGAAGCTGGTAACTATGACAAGTACCTAAAGAGATATGAAGATGCTGCTCTGAAAACCCAACGCAGTCTTGCTTTGTTGAACTTTGGTCAAAATGTTATATTTAGTACTGCTCTTTCATCAGCAATGGTGCTGTGCTCTCATGGGATCATGGATGGGACGATGACTGTTGGTGATTTGGTAATGGTGAATGGGCTTCTCTTTCAACTATCTCTTCCACTTAATTTCCTTGGTAGTGTTTATCGAGAGACTATGCAGAGTTTAATTGACATGAAATCGATGTTTCAGTTACTTGAGGAAAGAGCAGACATTAGGGACAAAGAAAATACAAAGCCTCTGAGATTTAATGGGGGAGAATCCAATTTGAGAATGTACATTTTAGAAGCCAAATTTATTTACCTCACCGAAAGAAAGATACTAGATGGAATATCACTTGTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGAACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTCTTTGATCCTAATTCTGGAAGTATAAAGATAGACGATCAAGATATTCGAGAGGTAACCCTTGAGAGTTTGCGGAAGTCCATTGGTGTTGTTCCACAAGATACTGTACTTTTCAACGATACAATATTTCATAACATTCACTATGGTCGGCTTTCTGCAACAAAAGAGGAGGTCTATGAAGCTGCTCGGCAAGCAGCAATTCATAACACTATCATGAATTTTCCTGATAAATATTCAACTGTTGTCGGAGAGCGAGGACTTAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTAGCTCGTGCATTCTTAAAAGCACCTGCAATTCTGTTGTGTGATGAAGCCACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCCTTAAAGTCAGTAGCAAAAAATCGAACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATTATTGTTTTGGAAAATGGGAAGGTGATTGAGCAAGGACCACATGAAGTGCTCTTATCAAAAGCAGGAAGATACGCACAACTGTGGGGACAGCAAAATAACTCAGTTGATGCAATTGATACAGCCATCAAGCTGGGAGCATAA 2253 0.4221 MLAAAASASRHLLQLDGSIGACSGSGNRVRSILTVSAIATIYPNRTKTCHSYGYGISFNAPKHRTCPSLLFAVKGFLSDSSNSNPPHGRVPRPYLPHPSSTVDGRALFSSSTKDEGSQSQKTGSSTIAKPRPSVPGGEVADVKILGTLASYLWMKDNLEFRVRVIAALGLLIGAKVLNVQVPFLFKLAVDSLTTATGSAATLASSSSGLALFATPVAVLVGYGIARSGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRGINFILSSMVFNVVPTILEISLVAGILAYKFGAPFALITSLSVAAYVIFTLSITQWRTKFRRAMNKADNDASTRVIDSLINYETVKYFNNEVYEAGNYDKYLKRYEDAALKTQRSLALLNFGQNVIFSTALSSAMVLCSHGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETMQSLIDMKSMFQLLEERADIRDKENTKPLRFNGGESNLRMYILEAKFIYLTERKILDGISLVVPAGKSVAIVGTSGSGKSTILRLLFRFFDPNSGSIKIDDQDIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAARQAAIHNTIMNFPDKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSVAKNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSKAGRYAQLWGQQNNSVDAIDTAIKLGA 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00263 750 CDD ABCC_ATM1_transporter 506 735 - -
Spst8g00263 750 SUPERFAMILY ABC transporter transmembrane region 159 475 IPR036640 GO:0005524|GO:0016020
Spst8g00263 750 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 147 731 IPR039421 -
Spst8g00263 750 SMART AAA_5 525 711 IPR003593 GO:0016887
Spst8g00263 750 Pfam ABC transporter transmembrane region 165 449 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst8g00263 750 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 165 462 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst8g00263 750 Gene3D ABC transporter type 1, transmembrane domain 151 486 IPR036640 GO:0005524|GO:0016020
Spst8g00263 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 735 IPR027417 -
Spst8g00263 750 CDD ABC_6TM_ATM1_ABCB7 167 470 - -
Spst8g00263 750 Gene3D - 499 746 IPR027417 -
Spst8g00263 750 FunFam ATP-binding cassette sub-family B member 7 137 484 - -
Spst8g00263 750 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 734 IPR003439 GO:0005524
Spst8g00263 750 MobiDBLite consensus disorder prediction 105 135 - -
Spst8g00263 750 MobiDBLite consensus disorder prediction 105 129 - -
Spst8g00263 750 ProSitePatterns ABC transporters family signature. 637 651 IPR017871 GO:0005524|GO:0016887
Spst8g00263 750 FunFam ABC transporter B family member 25 488 746 - -
Spst8g00263 750 Pfam ABC transporter 516 665 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00263 Spst-Chr8 2288948 2309317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00263 332 736 Calmodulin-binding Proteins AT2G36910 36.298 4.88e-61 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00263 8 2288948 2309317 Spst8g00263 8 2288948 2309317 ECH