Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00255 ATGGCAAAGGGTTGCACAAGCAACTCTTACGAAGATGCAAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAGATCACAAGATCTGCAAAGAAGAAGCTGCATGATACTCCTAAACTGAAACCAAAGAAGAGAGATGATGAAGTGGAACGTAGGCGATCTTCTCGTGTGCGGAACCCAGTTCCTTCTTACCGGGAAGATGTGAGCATACATCTTCCATCTCTGCGGAAGCGGTCAAGATCAAATTCTTCAACTTGGGGAAGTTACGTTGCAAGGCCTTTAGATGAAATCAAAGAAGCTGCAGAAGAAGAAAGACTTTGTGCTCTGGAGGCTGCAGAAGCACTCCAAATCAATTTGAAGTCTTCAAATCCCTCATTTATCAAGTCAATGGTTCGGTCTCATGTTTATAGTTGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAAAACTGTATATGACATGGTTTTAGAAGATGAAAATGGCTCAGAATACAAGGCTGTTTACATTGGCAACAGAAGTGGACTTAGCGGTGGATGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATCGAAGCTTCAAGATTTAAGATTTATATTGTTAGAGCATTCCCAAATATAGTTGAAGAAAAGGGAAAGGATATTTCAGAGGAAGAAGGAAATATGCATGCAACCAAAGTACCGAAAACTAGATGTAATCTTGAATCAGAATCCAAGACAAAAAAGCCAAGCCATGCCAATACAGAATCAGAGAGTTCTCAGGAGCATCTGCTGGATAGTAGAGTTGACAAAGAAGTCAAACAACAGGGTGGAAATTCAACTAACAAAACTAAAATCTCTAAGAAAAAAACACAAAAGGGATATAAACTTCCTGCTGCCGCGGATTCAAAAGGGAAAGTGCAATTGAAAACTGAGAAACCAAAGGCGTCTGTAAAGCTGTCAAACAAGACAAGGAAGTCAAAGTTAGAGAAGAAGAAAGGGTTTGTTCAGGATGCTGATAACAAGTTAGAGAAAGCTGCACTAGTTGAAGAAGCAAGCACATGTACGTTACAGAAAGCTAGAAAAAACCCAGCCCCGAAGTTTTTCAGAAAGAAAGCATAA 1182 0.3942 MAKGCTSNSYEDARKQRLEENKKRFEDLGISRISKNLTEITRSAKKKLHDTPKLKPKKRDDEVERRRSSRVRNPVPSYREDVSIHLPSLRKRSRSNSSTWGSYVARPLDEIKEAAEEERLCALEAAEALQINLKSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVYDMVLEDENGSEYKAVYIGNRSGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRAFPNIVEEKGKDISEEEGNMHATKVPKTRCNLESESKTKKPSHANTESESSQEHLLDSRVDKEVKQQGGNSTNKTKISKKKTQKGYKLPAAADSKGKVQLKTEKPKASVKLSNKTRKSKLEKKKGFVQDADNKLEKAALVEEASTCTLQKARKNPAPKFFRKKA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00255 393 SUPERFAMILY DNA-binding pseudobarrel domain 135 229 IPR015300 -
Spst8g00255 393 MobiDBLite consensus disorder prediction 245 347 - -
Spst8g00255 393 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Spst8g00255 393 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 47 230 IPR044837 -
Spst8g00255 393 Pfam B3 DNA binding domain 140 228 IPR003340 GO:0003677
Spst8g00255 393 SMART B3_2 140 231 IPR003340 GO:0003677
Spst8g00255 393 Coils Coil 112 132 - -
Spst8g00255 393 MobiDBLite consensus disorder prediction 245 293 - -
Spst8g00255 393 Gene3D - 114 231 IPR015300 -
Spst8g00255 393 MobiDBLite consensus disorder prediction 39 77 - -
Spst8g00255 393 MobiDBLite consensus disorder prediction 54 74 - -
Spst8g00255 393 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00255 Spst-Chr8 2243345 2249365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00255 9 233 B3 DNA Binding Superfamily AT5G58280 50.588 2.31e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst8g00255 B3 6.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00255 - - gmx:100786265 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00255 8 2243345 2249365 Spst8g00255 8 2243345 2249365 ECH