Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00247 ATGGCAGTGATTATTTCAAATTCAACTGTCAATATCTTATACCTTGTCACCAAAAAACTCTCCATGAAGTTCTACTCCTCACGAGTGCATCTTTTCCTTTTCATCATTGTTATTCTTTATCCTGCGGTTATTGCTGACTTAAGTTCTGACAAGCAAGCCCTTCTTGATTTTGCTAATTCTATCCCCCATCACCGTGATCTTAAGTGGAATCCAGCTACCTCAATCTGTACATCTTGGGTAGGCGTCACTTGTAATCCAAATGGCACCCGTGTTGTTTCTCTTCGGCTTCCTGGAATTGGACTAGTTGGCACCATTCCTGCCAACACACTTGGCAAGATTGACTCGCTCAAAAATATCAGCCTCCGTGCCAACCTACTCAGTGGAAGTCTTCCTCCTGATATTACTTCTCTTCCTTCTCTACAATATCTTTTCCTTCAGCATAATAACCTTTCTGGTAACATACCTACCTCGTTGTCCACCCACCTCAATGTACTTGATTTGTCATACAATTCCTTCACTGGTGCTATTCCAAAGACATTACAAAACTTAACACAACTAACTAGGTTGAATCTCCAGAACAATTCCCTATCTGGAGAGATACCAAATCTCAATGTCACTAAGCTCAGGCAATTGAATTTAAGTTACAACCATTTGAATGGCTCTATCCCTGCTGCCCTTCAGATTTTTCCCAATTCTTCCTTTGAGGGTAACTCTCTATGTGGATTACCTCTAAAGTCATGCTCTGTAGTCCCCCCTGGACCTCCTCCATCGGCAACGCCTACCCCACCAACTCCTCAAGGACATAGGTCCAAAAGTAAACTGAGTAAGGCAGCTATCATTGCAATTGCAGTTGGTGGGGGTGTGCTATTACTTTTAGTAGCTCTCATCATTGTTCTTTGCTGTTTAAAGAAAAAAGATGATGGAAGCCCCAGAGCTACTAAAGGCAAGGGTCCTAGTGGTGGGAGAAGTGAGAAGCCAAAAGAAGAGTTTGGAAGTGGGGTACAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCTTCGGCTGAAGTTCTTGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTGGAAGAGTCAACAACAGTTGTGGTGAAAAGGTTGAAGGAAGTTGTGGTAGGCAAAAGGGAATTTGAACAGCAGATGGAGATTGTGAGGAGAGTTGGAAAACACCCAAATGTTGTGCCACTTCGTGCTTACTATTATTCCAAGGATGAGAAGCTTTTGGTTTATGACTACATCCCAAATGGCAATCTATCAACACTCTTGCATGGTAACAGAGCAAGCGGAAGAACTCCTTTAGATTGGAACTCCCGAATAAAAATCTCCATTGGAATTGCGAGAGGAATTGCTCACATACATTCAGTTGGTGGTCCAAAATTCACTCATGGAAATGTGAAATCCTCGAATGTCCTTCTCAACCAAGATAACGATGGCTGCGTCTCTGACTTCGGCCTGACCCCACTTATGAATGTTCCTGCAACCCCTTCTAGAGCTGTCGGCTATCGAGCCCCTGAGGTGATTGAAACGCGTAAGCACACTCACAAGTCAGATGTGTACAGTTTTGGTGTTCTCCTTCTGGAAATGCTGACCGGAAAAGCGCCACAACAGTCTCCAGGACGGGATGACATGGTTGATCTCCCAAGGTGGGTGCAGTCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTGGAGCTGATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCAGATATGAGGCCTACCATGGAGGAGGTAGTGAGAATGATTGAAGAGATCCGGCAATCCGATTCGGAAAACCGGCCATCATCGGAAGAGAATAGATCCAAGGAGGAATCAACTGCTCAAACTCCATAA 1968 0.4385 MAVIISNSTVNILYLVTKKLSMKFYSSRVHLFLFIIVILYPAVIADLSSDKQALLDFANSIPHHRDLKWNPATSICTSWVGVTCNPNGTRVVSLRLPGIGLVGTIPANTLGKIDSLKNISLRANLLSGSLPPDITSLPSLQYLFLQHNNLSGNIPTSLSTHLNVLDLSYNSFTGAIPKTLQNLTQLTRLNLQNNSLSGEIPNLNVTKLRQLNLSYNHLNGSIPAALQIFPNSSFEGNSLCGLPLKSCSVVPPGPPPSATPTPPTPQGHRSKSKLSKAAIIAIAVGGGVLLLLVALIIVLCCLKKKDDGSPRATKGKGPSGGRSEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVRRVGKHPNVVPLRAYYYSKDEKLLVYDYIPNGNLSTLLHGNRASGRTPLDWNSRIKISIGIARGIAHIHSVGGPKFTHGNVKSSNVLLNQDNDGCVSDFGLTPLMNVPATPSRAVGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPTMEEVVRMIEEIRQSDSENRPSSEENRSKEESTAQTP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00247 655 MobiDBLite consensus disorder prediction 628 649 - -
Spst8g00247 655 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Spst8g00247 655 Pfam Protein kinase domain 362 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00247 655 MobiDBLite consensus disorder prediction 307 335 - -
Spst8g00247 655 PANTHER OS05G0588300 PROTEIN 33 642 - -
Spst8g00247 655 MobiDBLite consensus disorder prediction 628 655 - -
Spst8g00247 655 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Spst8g00247 655 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 435 642 - -
Spst8g00247 655 Gene3D Ribonuclease Inhibitor 48 160 IPR032675 -
Spst8g00247 655 CDD STKc_IRAK 365 630 - -
Spst8g00247 655 MobiDBLite consensus disorder prediction 251 270 - -
Spst8g00247 655 Gene3D Ribonuclease Inhibitor 161 249 IPR032675 -
Spst8g00247 655 FunFam pollen receptor-like kinase 1 327 434 - -
Spst8g00247 655 ProSitePatterns Protein kinases ATP-binding region signature. 365 396 IPR017441 GO:0005524
Spst8g00247 655 FunFam Leucine-rich repeat receptor-like protein kinase 160 247 - -
Spst8g00247 655 ProSiteProfiles Protein kinase domain profile. 359 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00247 655 SUPERFAMILY Protein kinase-like (PK-like) 363 638 IPR011009 -
Spst8g00247 655 Gene3D Phosphorylase Kinase; domain 1 327 434 - -
Spst8g00247 655 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Spst8g00247 655 Gene3D Transferase(Phosphotransferase) domain 1 435 654 - -
Spst8g00247 655 SUPERFAMILY L domain-like 51 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00247 Spst-Chr8 2152986 2155938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00247 15 653 Receptor kinase-like Gene Family AT5G58300 68.006 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst8g00247 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00247 - - gmx:100818344 1092.8