Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00244 ATGTCCGTACACTCGACACTAAACCTCTACCCCATGAACCTCGCCACCCCAAGTTCCCATTTTGATAATTACCCACCCTGCAAAACCAAGACCAAAACCCAAAGGAGGCTTCTTCGGATCATAATAACCGATCACGACGCCACTGATTCTGACTCCGACCACGAAAAACAGCAACAACAGAACAACCAAACTAAAACAACAAAAGTGAAGAGGGAAATTACCCAAATCAGCATGAACCTTCCACTATCGGATAGCTCCTTTTCTTCTTGTTCGTATTACTCTGCTTCAGCTTCTGCTTCCACTTGTTCCTCGGAACAAGCCTCAAAGTGCAAGAGACCCAAAAAACAGACACCGTCCTCCGCCGCTGCCAGCCGTCGCAGCAAGTTCCGCGGCGTTCGTCAGCGGCCGTGGGGGAGGTGGGCCGCCGAGATCCGCGACCCCAACCGCCGGAAACGCCTCTGGCTGGGAACTTTCGATACGGCAGAGGAAGCCGCCACCGAATACGACAAAGCCGCCGTCAAACTGAAGGGTCCCAACGCCGTCACCAACTTCCCCCTCACAACGCCGCCTCCGGCGGCGTCGTCCCCCGTCGTCCCCACCGATAGCTTCAGCACCGACGGCGGCGCGTCGTACTCCGACTTGGTGTCCTCGCCGACGTCCGTTTCAACCTACGACTGCGACTCGACGCCGTTCGACAGCTACCGTTACGGCGACGTGGACGCGCTCGGGTTCCACATCGACGCGCCGTTAAGTTTTGCGGACGATAACGTCGCTCTGACGTGTCATCACGGTAAGGAGGAGGAGGCATTTGATGAATTCGATCTCGACGAGTTCATGACGTGGCTTCACTAA 852 0.5599 MSVHSTLNLYPMNLATPSSHFDNYPPCKTKTKTQRRLLRIIITDHDATDSDSDHEKQQQQNNQTKTTKVKREITQISMNLPLSDSSFSSCSYYSASASASTCSSEQASKCKRPKKQTPSSAAASRRSKFRGVRQRPWGRWAAEIRDPNRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLTTPPPAASSPVVPTDSFSTDGGASYSDLVSSPTSVSTYDCDSTPFDSYRYGDVDALGFHIDAPLSFADDNVALTCHHGKEEEAFDEFDLDEFMTWLH 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00244 283 ProSiteProfiles AP2/ERF domain profile. 128 185 IPR001471 GO:0003700|GO:0006355
Spst8g00244 283 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Spst8g00244 283 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Spst8g00244 283 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 194 - -
Spst8g00244 283 SUPERFAMILY DNA-binding domain 127 186 IPR016177 GO:0003677
Spst8g00244 283 FunFam Ethylene-responsive transcription factor 2 127 186 - -
Spst8g00244 283 SMART rav1_2 128 191 IPR001471 GO:0003700|GO:0006355
Spst8g00244 283 MobiDBLite consensus disorder prediction 103 124 - -
Spst8g00244 283 MobiDBLite consensus disorder prediction 103 134 - -
Spst8g00244 283 MobiDBLite consensus disorder prediction 45 70 - -
Spst8g00244 283 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Spst8g00244 283 PIRSF PTI6 7 283 IPR017392 GO:0003700
Spst8g00244 283 Pfam AP2 domain 127 177 IPR001471 GO:0003700|GO:0006355
Spst8g00244 283 Gene3D AP2/ERF domain 127 187 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00244 Spst-Chr8 2143472 2144323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00244 28 233 AP2-EREBP Transcription Factor Family AT4G27950 41.706 1.22e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g00244 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00244 K13434 - gmx:100817278 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00244 8 2143472 2144323 Spst8g00244 8 2143472 2144323 ECH
Spst6g00221 6 2250349 2251188 Spst8g00244 8 2143472 2144323 PCT